BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921163
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21780.1 | Symbols: | BTB/POZ domain-containing protein | c... 1596 0.0
> AT1G21780.1 | Symbols: | BTB/POZ domain-containing protein |
chr1:7652029-7654014 FORWARD LENGTH=1478
Length=1478
Score = 1596 bits (864), Expect = 0.0
Identities = 961/1009 (95%), Gaps = 1/1009 (0%)
Strand=Plus/Plus
Query 10 agagagagTGGATGGGGGACACGAAGGTGGAGACAATCTCGAGGTTAGCTCAATGGAGGA 69
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 339 AGAGAAAGTGGATGGGGGACACGAAGGTAGAGACAATCTCGAGGTTAGCTCAATGGAGAA 398
Query 70 TTGAAAATTTTGGACCTTGTTCTTTCAAAAAGTCCGATCCTTTTAAAGTCGGAATTTGGA 129
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 399 TTGAAAATTTTGGTCCTTGTTCTTTCAAAAAGTCCGATCCTTTCAAAGTCGGAATTTGGA 458
Query 130 ATTGGCATCTGTCTATAGAGAGGAATCGTTATCTATCAGTGAGGCTTTTCCCAGAGCTTT 189
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 459 ATTGGCATCTGTCTATAGAGAGGAATCGCTATCTATCAGTGAGGCTATTCCCAGAACTTT 518
Query 190 CTCGAGTATCTAAAGAGCAACCTCCTGTTGCCAAATTTGTTCTTCGTGTCTCCAACGTTG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCGAGTATCTAAAGAGCAACCTCCTGTTGCCAAATTTGTTCTTCGTGTCTCCAACGTTG 578
Query 250 GTCCTAATCGTAGATTCTACATCTCTCCTGTGTATGAAAAACTGTTGCGTACAACTGATG 309
| || |||||||||||||||||||||||||| ||||| || ||| |||||||||||||||
Sbjct 579 GCCCCAATCGTAGATTCTACATCTCTCCTGTTTATGAGAAGCTGCTGCGTACAACTGATG 638
Query 310 ATTGTGTGTGGCATGTGGACTCCAGCTTCCATGGTCGATTCACCATTGATGTCGAATTTC 369
|||||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 639 ATTGTGTGTGGCATGTTGACTCCAGTTTCCACGGTCGATTCACCATTGATGTTGAGTTTC 698
Query 370 TGGATCTCAAAATCTGCCCTTTGAATGGTGGTGAAGCTTCTCCTGTTTGGCCAACCGATT 429
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 699 TTGATCTCAAAATCTGCCCTGTGAATGGTGGTGAAGCTTCTCCTGTTTGGCCAACCGATG 758
Query 430 CAACAATGCAATCAATCTCGACTCAAACCACTCTCAAATGCTTATCCCGGATGCTAGAGG 489
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CAACAATGCAATCAATCTCTACTCAAACCACTCTCAAATGCTTATCCCGGATGCTAGAGG 818
Query 490 AAAGCATCCTAACCGATGTAATCATCCACACAGCCGATGGAACACTCTCTGCTCACAAAG 549
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AAAGCATACTAACCGATGTAATCATCCACACAGCCGATGGAACACTCTCTGCTCACAAAG 878
Query 550 CTATCCTCTCGGCTAGCTCTACCGTTTTCAAAAGCATGTTCCACCACGACCTCAAGGAAA 609
|||||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 879 CTATCCTCTCAGCTAGCTCAACTGTTTTCAAAAGCATGTTCCACCACGACCTCATGGAAA 938
Query 610 AAGAATCATCCACAATCCACATCGACGACATGTCAAGAGAATCTTGCATGGCTCTACTAA 669
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 939 AGGAATCATCCACAATCCACATAGACGACATGTCGAGAGAATCTTGCATGGCTCTACTAA 998
Query 670 GTTACCTATACGGAAACATAACCCAAGAAGAGTTCTGGAAACACAGGCTTGCCCTACTCG 729
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 999 GTTACCTCTACGGAAACATAACCCAAGAAGAGTTCTGGAAACACAGGCTCGCCCTCCTCG 1058
Query 730 GTGCTGCAAACAAATACGACATAACGGATTTGAAAGCAGCGTGCGAGGAAAGCCTAATGG 789
| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1059 GCGCTGCAAACAAGTACGACATAACGGATTTGAAAGCAGCCTGCGAGGAGAGCCTAATGG 1118
Query 790 AAGACATAAACTCGAGTAATGTGCTCGAGAGACTACAAGAAGCTTGGCTGTATCAGCTGG 849
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1119 AAGATATAAACTCGAGTAATGTGCTCGAGAGGCTACAAGAAGCTTGGCTTTATCAGCTGG 1178
Query 850 AGAAACTGAAGAAAGGGTGTCTGATGTATTTGTTTGATTTCGGAAAGATATATGATGTCA 909
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1179 AGAAACTGAAGAAAGGGTGTTTGATGTATTTGTTTGATTTCGGAAAGATTTATGATGTCA 1238
Query 910 GAGAAGAAATCAGCAATTTCTTCAGGCAAGCTGATCGAGAACTGATGTTGGAGATGTTTC 969
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1239 GAGAAGAAATCAGCAGTTTCTTCAGGCAAGCTGATCGAGAACTGATGCTGGAGATGTTTC 1298
Query 970 AAGAGGTTTTGTCCGTGTGGAAACCGGTCTAATATACT-TTACACACAT 1017
||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1299 AAGAGGTTTTGTCTGTGTGGAAACCGGTCTAATATACACTTACACACAT 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5