BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921171

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21864.1 | Symbols:  | Plant thionin family protein | chr1:7...   405    1e-112
  AT1G21866.1 | Symbols:  | Plant thionin family protein | chr1:7...   374    4e-103


> AT1G21864.1 | Symbols:  | Plant thionin family protein | chr1:7675502-7675971 
FORWARD LENGTH=470
Length=470

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 294/330 (89%), Gaps = 6/330 (2%)
 Strand=Plus/Plus

Query  1    TTTGCAGACTCACGATACTTACGACATGGCAGCTCCAA-TGTCAAAGAAAATCTG-CAGT  58
            ||||||||||||| |||||||||||||||||| | ||| ||||||||||||| || | ||
Sbjct  39   TTTGCAGACTCACAATACTTACGACATGGCAG-TTCAAGTGTCAAAGAAAATTTGTC-GT  96

Query  59   GTATTGATAATTGCAATTTTATTTGCAACGATGTTTTCAGCTCATTCCAACTCGATAGAT  118
            |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  97   GTATTGATGATTGTAATTTTATTTGCAATGATGTTTTCAGCTCATTCCAACTCGATAGAT  156

Query  119  GTGTGTGTCAAAGATTGTGTCGTGAATGTGTGCATGAAAGCATCaaaaaaaGCGACTCCA  178
            |||||||||||| |||||| ||||||   |||||||||||||||||| ||||||||||||
Sbjct  157  GTGTGTGTCAAAAATTGTGGCGTGAACCAGTGCATGAAAGCATCAAAGAAAGCGACTCCA  216

Query  179  GCCATTTGTGACAATCCTTGCAAGATAATGTGTGATCCAATGAACGGTGAGCAATACATC  238
            || || |||||||| ||||||||||| || ||||||||  | |||   |||| |||||||
Sbjct  217  GCTATATGTGACAACCCTTGCAAGATTATATGTGATCCTCTCAACAACGAGCGATACATC  276

Query  239  GTCCCTCGAGGTAATGGTGGTCCTATCAAAAGGTTCTGCAGA-CGATTTAGCTGGATCTG  297
            |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||
Sbjct  277  GTCCCTCGAGGTAATGGTGGTCCTATAAAAAGGTTCTGCAGAGC-ATTTAGCTGGATTTG  335

Query  298  TAACCCGTAAATGATCGAAATTACAAAAAT  327
            || | ||||| ||||||| |||||||||||
Sbjct  336  TAGCGCGTAATTGATCGACATTACAAAAAT  365


> AT1G21866.1 | Symbols:  | Plant thionin family protein | chr1:7677499-7677959 
FORWARD LENGTH=461
Length=461

 Score =  374 bits (202),  Expect = 4e-103
 Identities = 271/304 (89%), Gaps = 6/304 (2%)
 Strand=Plus/Plus

Query  26   ATGGCAGCTCCAA-TGTCAAAGAAAATCTGCAGTGTATTGATAATTGCAATTTTATTTGC  84
            |||||| || ||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct  1    ATGGCAACT-CAAGTGTCAAAGAAAATCTGCAGTGTATTGATGATTGTAATTTTATTTGC  59

Query  85   AACGATGTTTTCAGCTCATTCCAACTCGATAGATGTGTGTGTCAAAGATTGTGTCGTGAA  144
            || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  60   AATGATGTTTTCAGCTCATTCCAACTCGATAGATGTGTGTGTCAAAAATTGTGTCGTGAA  119

Query  145  TGTGTGCATGAAAGCATCaaaaaaaGCGACTCCAGCCATTTGTGACAATCCTTGCAAGAT  204
               |||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||
Sbjct  120  CCAGTGCATGAAAGCATCAAAGAAAGCGACTCCAGCCATATGTGCCAACCCTTGCAAGAT  179

Query  205  AATGTGTGATCCAATGAACGGTGAGCAATACATCGTCCCTCGAGGTAATGGTGGTCCTAT  264
             || ||||||||  | |||   |||| |||||||||||||||||||||||||||||||||
Sbjct  180  TATATGTGATCCTCTCAACAACGAGCGATACATCGTCCCTCGAGGTAATGGTGGTCCTAT  239

Query  265  CAAAAGGTTCTGCAGA-CGATTTAGCTGGATCTGTAACC-CGTAAATGATCGAAATTACA  322
             ||||||||||||||| | |||||||||||| |||| || | ||| ||||| | ||||||
Sbjct  240  AAAAAGGTTCTGCAGAGC-ATTTAGCTGGATTTGTA-CCGCTTAATTGATCCACATTACA  297

Query  323  AAAA  326
            ||||
Sbjct  298  AAAA  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5