BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921175
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21900.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1086 0.0
> AT1G21900.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:7690802-7692438 REVERSE LENGTH=1125
Length=1125
Score = 1086 bits (588), Expect = 0.0
Identities = 663/699 (95%), Gaps = 5/699 (1%)
Strand=Plus/Plus
Query 1 AGAAGAAGACCGTCGTTGTTCTCCGATGGCGATTAATAGAATTGCTCATGGTTCGAGGGT 60
||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 87 AGAAGAAGACCATCGTTGTTCTCCGATGGCTATTAACAGAATTGCTCATGGTTC-TCTGT 145
Query 61 TT-TGGCAGTTGTATTGTTCTTGT-TGACGGTTAATTACGGCGAAGCTATATGGTTGACG 118
|| || | || || |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 146 TTCTGACGGTAGTCTTGTTCTT-TCTGACGGTTAATTACGGCGAAGCTATATGGTTGACG 204
Query 119 ATTCCGACGACGGGAGGGACGAAGTGTGTCTCCGAGGAGATACAGAGCAACGTCGTCGTT 178
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 ATTCCGACGACGGGTGGAACGAAGTGTGTCTCCGAGGAGATACAGAGCAACGTCGTCGTT 264
Query 179 TTGGCTGATTACTATGTCGTCGATGAGCATAATCCTGAAAACACTCCTGCTGTTTCTTCT 238
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 265 TTGGCTGATTACTATGTCGTCGATGAGCATAATCCTGAAAATACACCTGCTGTTTCTTCT 324
Query 239 AAGGTAACATCTCCTTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATGGTCAG 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 AAGGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATGGTCAG 384
Query 299 TTTGCGTTCACAACTCAAGAAGCTGGGAACTACTTGGCTTGTTTCTGGATTGATTCCACT 358
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 385 TTTGCATTCACAACTCAAGAAGCTGGGAACTACTTGGCTTGTTTCTGGATTGATTCCAGT 444
Query 359 CATCCCTTAGCCAATCCTATAACCCTTGGGGTTGATTGGAAGATGGGTATTGCAGCCAAA 418
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 445 CATCACTTAGCCAATCCTATAACCCTTGGGGTTGATTGGAAGATGGGTATTGCAGCTAAA 504
Query 419 GATTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGGGTGTTGAGCTTCAGTTGAGGAGA 478
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGGGTGTTGAGCTTCAGTTGAGGAGA 564
Query 479 CTTGAAGGGTTAGTGCAGTCGATTCGTGAGAACATAAATTACATAAAAGACAGGGAAGCG 538
||||||||||| |||| |||||||||||||||| |||| || ||||||||||||||||||
Sbjct 565 CTTGAAGGGTTGGTGCTGTCGATTCGTGAGAACTTAAACTATATAAAAGACAGGGAAGCG 624
Query 539 GAGATGCGAGAAGTGAGTGAAACAACCAACTCAAGAGTGGCTTGGTTCAGTATAATGTCA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GAGATGCGAGAAGTGAGTGAAACAACCAACTCAAGAGTGGCTTGGTTCAGTATAATGTCA 684
Query 599 CTCGGGGTTTGCGTTGTGGTTGCAGGTACACAGATATTGTATCTGAAGCGGTATTTCCAC 658
|||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||
Sbjct 685 CTCGGGGTTTGCGTTGTGGTTGTGGGTTCACAGATACTGTATCTGAAGAGGTATTTCCAC 744
Query 659 AAGAAGAAACTCATCTA-AAACTTGGCCTGAAGGATACT 696
||||||||||| ||||| |||||||||||||||||||||
Sbjct 745 AAGAAGAAACTTATCTAGAAACTTGGCCTGAAGGATACT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5