BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921182 Length=715 Score E Sequences producing significant alignments: (Bits) Value AT1G21960.1 | Symbols: | RING/U-box superfamily protein | chr1... 372 3e-102 ATCG01180.1 | Symbols: RRN23S.2 | chloroplast-encoded 23S ribos... 257 9e-68 ATCG00950.1 | Symbols: RRN23S.1 | chloroplast-encoded 23S ribos... 257 9e-68 > AT1G21960.1 | Symbols: | RING/U-box superfamily protein | chr1:7725972-7726586 FORWARD LENGTH=615 Length=615 Score = 372 bits (201), Expect = 3e-102 Identities = 281/317 (89%), Gaps = 16/317 (5%) Strand=Plus/Plus Query 381 TACATGTACTGTAAAGTCATTGTTCCCTCTCCTCCTTGGATTGACTCGTTCGATGAGACC 440 |||||||||||||||||||||||||| | | || ||||||||||||| ||||||||| Sbjct 313 TACATGTACTGTAAAGTCATTGTTCCA-C-C-TC---GGATTGACTCGTTTGATGAGACC 366 Query 441 ACCAATAATATCCG-GTTAATTAGACCGGCAAGTAAGCTTGCGGTTGGTCGTTTGGCAAG 499 |||||||||||| | ||| ||||||||||||| |||||||| ||||| ||||||||||| Sbjct 367 ACCAATAATATC-GAGTTGATTAGACCGGCAAATAAGCTTGTGGTTGACCGTTTGGCAAG 425 Query 500 GAAAATATATAAGAACAATAAGAAGAAGACGTCCAAGTTTGACGCCAGCATGTGCACAAT 559 |||| ||||||| || || |||||| | ||||| | |||||| ||| |||||||||| Sbjct 426 GAAAGTATATAATAAGAA---GAAGAA-A--TCCAACTCTGACGCGAGCGTGTGCACAAT 479 Query 560 TTGTTTGGATGG-GTTTGAAAAAGGAGAAATAGTCGTGACCTTACCATGTGGCCACGAGT 618 ||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 480 TTGTTTGGA-GGAGTTTGAAAAGGGAGAAATAGTGGTGACCTTACCATGTGGCCACGAGT 538 Query 619 TTGACGACGGATGTATTGTGAAGTGGTTTTTGAAAGATCATGTTTGTCCATTGTACCGTT 678 ||||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||| Sbjct 539 TTGACGATGGATGTATTGGGAAGTGGTTTTTGAAAGACCATGTTTGTCCATTGTGCCGTT 598 Query 679 TCGAGTTGCCTTGTTAA 695 ||||||||||||||||| Sbjct 599 TCGAGTTGCCTTGTTAA 615 Score = 309 bits (167), Expect = 2e-83 Identities = 220/244 (90%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 148 GCGAAATCGACCTCAAACCTAAATCAAAAGATGCTGGATCATTCAAAATCTGCGTAAGTG 207 ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 26 GCGAAATAGACCTCAAACCGAAATCACAAGATGCTGGATCATTCAAAATCTGCGTAAGTG 85 Query 208 CCCTAAGGTCGGACACATCAATTAGTCTTATACCAAATTTCG-T-TCTC-T-C---G--T 258 ||| ||| ||||||||||||||||||||| ||||||||||| | |||| | | | | Sbjct 86 CCCGAAGATCGGACACATCAATTAGTCTTCCACCAAATTTCGTTCTCTCGTACAATGACT 145 Query 259 ACGAAGGCGTCATATCCTCCTACCCTAATGACTTGAAAAAACTGACTGATTGGTTGTACT 318 ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 146 ACGAAGGTGTCATATCCTCCTACCCTAATGACTCGAAAAAACTGAATGATTGGTTGTACT 205 Query 319 TAGCAGGGATCTCCGACCAATCTGTTGACATTGCTAACTCTCAACTCACTGAACGAATCT 378 ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 206 CAGCAGGGCTCTCCGAACAATATGTTGACATTGCTAACTCTCAACTCACTGAACGAATCT 265 Query 379 TGTA 382 ||| Sbjct 266 -GTA 268 > ATCG01180.1 | Symbols: RRN23S.2 | chloroplast-encoded 23S ribosomal RNA | chrC:131149-133958 REVERSE LENGTH=2810 Length=2810 Score = 257 bits (139), Expect = 9e-68 Identities = 145/148 (98%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 1 GTTCGAGCTTTTCCTGGGAGTATAGCATGGGTTACTTTAGCGCCGTAGCGCCTGGTACTC 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1615 GTTCGAGCTTTTCCTGGGAGTATAGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTC 1556 Query 61 GAACATTGGGTCGGGGCATTTTCTCTACCCCTTCTTACCCTGATAAAACAGGGACACCTT 120 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1555 GAACATTGGCTCGGGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAACAGGGACACCTT 1496 Query 121 GCGTCCTTGAACCGATAACCATCTTTCG 148 |||||||||||||||||||||||||||| Sbjct 1495 GCGTCCTTGAACCGATAACCATCTTTCG 1468 > ATCG00950.1 | Symbols: RRN23S.1 | chloroplast-encoded 23S ribosomal RNA | chrC:104691-107500 FORWARD LENGTH=2810 Length=2810 Score = 257 bits (139), Expect = 9e-68 Identities = 145/148 (98%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 1 GTTCGAGCTTTTCCTGGGAGTATAGCATGGGTTACTTTAGCGCCGTAGCGCCTGGTACTC 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1615 GTTCGAGCTTTTCCTGGGAGTATAGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTC 1556 Query 61 GAACATTGGGTCGGGGCATTTTCTCTACCCCTTCTTACCCTGATAAAACAGGGACACCTT 120 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1555 GAACATTGGCTCGGGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAACAGGGACACCTT 1496 Query 121 GCGTCCTTGAACCGATAACCATCTTTCG 148 |||||||||||||||||||||||||||| Sbjct 1495 GCGTCCTTGAACCGATAACCATCTTTCG 1468 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34661561430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5