BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921188
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21970.1 | Symbols: LEC1, EMB 212, EMB212, NF-YB9 | Histone ... 913 0.0
> AT1G21970.1 | Symbols: LEC1, EMB 212, EMB212, NF-YB9 | Histone
superfamily protein | chr1:7727577-7729617 REVERSE LENGTH=936
Length=936
Score = 913 bits (494), Expect = 0.0
Identities = 574/611 (94%), Gaps = 12/611 (2%)
Strand=Plus/Plus
Query 69 ATCGTGGCCCAGCAGCAACCACCATGTATGGCTCGTGAACAAGACCAGTACATGCCAATC 128
||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 185 ATCGTGGTCCAGCAGCAACCACCATGTGTGGCTCGTGAGCAAGACCAATACATGCCAATC 244
Query 129 GCAAACGTCATAAGAATCATGCGTAAAATCTTACCGTCGCACGCTAAAATCTCTGACGAC 188
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 245 GCAAACGTCATAAGAATCATGCGTAAAACCTTACCGTCTCACGCCAAAATCTCTGACGAC 304
Query 189 GCCAAAGAAACGATTCAAGAATGTGTCTCCGAGTACATAAGCTTCGTGACCGGTGAAGCC 248
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 305 GCCAAAGAAACGATTCAAGAATGTGTCTCCGAGTACATCAGCTTCGTGACCGGTGAAGCC 364
Query 249 AACGAGCGTTGCCAACGTGAGCAACGTAAGACCATAACTGCTGAAGATATCCTTTGGGCT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AACGAGCGTTGCCAACGTGAGCAACGTAAGACCATAACTGCTGAAGATATCCTTTGGGCT 424
Query 309 ATGAGCAAGCTTGGGTTCGATAACTACGTGGATCCCCTCACCGTGTTTATTAACCGGTAC 368
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 425 ATGAGCAAGCTTGGGTTCGATAACTACGTGGACCCCCTCACCGTGTTCATTAACCGGTAC 484
Query 369 CGTGAGATAGAGACCGATCGTGGGTCGGCACTTAGAGGTGAGCCACCGTCGTTGAGACAG 428
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 485 CGTGAGATAGAGACCGATCGTGGTTCTGCACTTAGAGGTGAGCCACCGTCGTTGAGACAA 544
Query 429 GCCTATGGAGGAAATGGTATTGGGTTTCACGGCCCACCACATGGCCCATCTCATGGCCTA 488
||||||||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 545 ACCTATGGAGGAAATGGTATTGGGTTTCACGGCCCA-----T--C---TC--ATGGCCTA 592
Query 489 CCTCCTCCTGGTCCTTATGGTTATGGTATGTTGGACCAATCCATGGTTATGGGAGATGGT 548
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 593 CCTCCTCCGGGTCCTTATGGTTATGGTATGTTGGACCAATCCATGGTTATGGGAGGTGGT 652
Query 549 CGGTTCTACCAAAACGGGTCGTCGGGTCAGGACGAATCAAGTGCTGGTGGTGGCTATTCG 608
|||| |||||||||||||||||||||||| || ||||| |||| ||||||||||| ||||
Sbjct 653 CGGTACTACCAAAACGGGTCGTCGGGTCAAGATGAATCCAGTGTTGGTGGTGGCTCTTCG 712
Query 609 TCTTCCATTAACGGAATGCCGGCGTATGACCAATATGGTCAGTATAAGTGAAGATGGAAT 668
||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 713 TCTTCCATTAACGGAATGCCGGCTTTTGACCATTATGGTCAGTATAAGTGAAGATGGAAT 772
Query 669 TATTCTTCATT 679
|||||||||||
Sbjct 773 TATTCTTCATT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5