BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921191

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21925.1 | Symbols:  | Plant thionin family protein | chr1:7...   307    4e-83
  AT1G21928.1 | Symbols:  | Plant thionin family protein | chr1:7...   307    4e-83


> AT1G21925.1 | Symbols:  | Plant thionin family protein | chr1:7710423-7710725 
REVERSE LENGTH=303
Length=303

 Score =  307 bits (166),  Expect = 4e-83
 Identities = 214/237 (90%), Gaps = 3/237 (1%)
 Strand=Plus/Plus

Query  21   ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTTTGATTGTTACAGCTTTAATCACA  80
            |||||||||||||||||||||||||||||| ||||| ||||  ||||| ||||  || ||
Sbjct  1    ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTGATCATTACAACTTTGCTCGCA  60

Query  81   ATGATGTTTTCAGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAAACATTGT  140
            ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct  61   ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAAACATTGT  120

Query  141  GTCTCAAACCAATGTTTGAAAGAAGTTAAAAACGCTACTCCTACAATGTGCGAGGATGCT  200
            |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  121  GTCTCAAACCAATGCTTGAAAGAAGTTAAAAACGCTACTCCTATAATGTGCGAGGATGCT  180

Query  201  TGCAAAAAACTTTGCAATGACCTACAA-AA--TGGTAAAGAAAAATACATTGTGCCT  254
            |||||||||||||||| ||| | |||| ||  |||| |||||| |||| || |||||
Sbjct  181  TGCAAAAAACTTTGCACTGAACAACAACAAAGTGGTCAAGAAAGATACCTTTTGCCT  237


> AT1G21928.1 | Symbols:  | Plant thionin family protein | chr1:7712211-7712513 
REVERSE LENGTH=303
Length=303

 Score =  307 bits (166),  Expect = 4e-83
 Identities = 214/237 (90%), Gaps = 3/237 (1%)
 Strand=Plus/Plus

Query  21   ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTTTGATTGTTACAGCTTTAATCACA  80
            |||||||||||||||||||||||||||||| ||||| | ||  ||||| ||||  || ||
Sbjct  1    ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTAATCATTACAACTTTGTTCGCA  60

Query  81   ATGATGTTTTCAGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAAACATTGT  140
            ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct  61   ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAAACATTGT  120

Query  141  GTCTCAAACCAATGTTTGAAAGAAGTTAAAAACGCTACTCCTACAATGTGCGAGGATGCT  200
            |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  121  GTCTCAAACCAATGCTTGAAAGAAGTTAAAAACGCTACTCCTATAATGTGCGAGGATGCT  180

Query  201  TGCAAAAAACTTTGCAATGACCTACAA-AA--TGGTAAAGAAAAATACATTGTGCCT  254
            |||||||||||||||| ||| | |||| ||  |||| |||||| |||| ||||||||
Sbjct  181  TGCAAAAAACTTTGCACTGAACAACAACAAAGTGGTCAAGAAAGATACCTTGTGCCT  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5