BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921192
Length=322
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21925.1 | Symbols: | Plant thionin family protein | chr1:7... 174 4e-43
AT1G21928.1 | Symbols: | Plant thionin family protein | chr1:7... 169 2e-41
> AT1G21925.1 | Symbols: | Plant thionin family protein | chr1:7710423-7710725
REVERSE LENGTH=303
Length=303
Score = 174 bits (94), Expect = 4e-43
Identities = 165/197 (84%), Gaps = 13/197 (7%)
Strand=Plus/Plus
Query 21 ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTCTGATTGTTACAGCTTTAATCACA 80
|||||||||||||||||||||||||||||| |||||||||| ||||| |||| || ||
Sbjct 1 ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTGATCATTACAACTTTGCTCGCA 60
Query 81 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAATTTGAAA 140
||||||||||||||||||||||||||||||||||||||| |||||||||| || | |
Sbjct 61 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAA----ACA 116
Query 141 T-GTGTCCCAAACCAGTG-TATGAAAGTGGTAAAAAACGGGACTCCTGTCATATGTGAAG 198
| ||||| ||||||| || | |||||| || ||||||| |||||| | | ||||| |
Sbjct 117 TTGTGTCTCAAACCAATGCT-TGAAAGAAGTTAAAAACGCTACTCCTAT-A-ATGTGC-G 172
Query 199 AG-ATG-T-GCAAAAAA 212
|| ||| | ||||||||
Sbjct 173 AGGATGCTTGCAAAAAA 189
> AT1G21928.1 | Symbols: | Plant thionin family protein | chr1:7712211-7712513
REVERSE LENGTH=303
Length=303
Score = 169 bits (91), Expect = 2e-41
Identities = 164/197 (83%), Gaps = 13/197 (7%)
Strand=Plus/Plus
Query 21 ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTCTGATTGTTACAGCTTTAATCACA 80
|||||||||||||||||||||||||||||| ||||||| || ||||| |||| || ||
Sbjct 1 ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTAATCATTACAACTTTGTTCGCA 60
Query 81 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAATTTGAAA 140
||||||||||||||||||||||||||||||||||||||| |||||||||| || | |
Sbjct 61 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAA----ACA 116
Query 141 T-GTGTCCCAAACCAGTG-TATGAAAGTGGTAAAAAACGGGACTCCTGTCATATGTGAAG 198
| ||||| ||||||| || | |||||| || ||||||| |||||| | | ||||| |
Sbjct 117 TTGTGTCTCAAACCAATGCT-TGAAAGAAGTTAAAAACGCTACTCCTAT-A-ATGTGC-G 172
Query 199 AG-ATG-T-GCAAAAAA 212
|| ||| | ||||||||
Sbjct 173 AGGATGCTTGCAAAAAA 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14979789202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5