BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921193
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21925.1 | Symbols: | Plant thionin family protein | chr1:7... 318 2e-86
AT1G21928.1 | Symbols: | Plant thionin family protein | chr1:7... 318 2e-86
> AT1G21925.1 | Symbols: | Plant thionin family protein | chr1:7710423-7710725
REVERSE LENGTH=303
Length=303
Score = 318 bits (172), Expect = 2e-86
Identities = 216/237 (91%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 21 ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTCTGATTGTTACAGCTTTAATCACA 80
|||||||||||||||||||||||||||||| |||||||||| ||||| |||| || ||
Sbjct 1 ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTGATCATTACAACTTTGCTCGCA 60
Query 81 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAAACATTGT 140
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 61 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAAACATTGT 120
Query 141 GTCTCAAACCAATGTTTGAAAGAAGTTAAAAACGCTACTCCTACAATGTGCGAGGATGCT 200
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 GTCTCAAACCAATGCTTGAAAGAAGTTAAAAACGCTACTCCTATAATGTGCGAGGATGCT 180
Query 201 TGCAAAAAACTTTGCAATGACCTACAA-AA--TGGTAAAGAAAAATACATTGTGCCT 254
|||||||||||||||| ||| | |||| || |||| |||||| |||| || |||||
Sbjct 181 TGCAAAAAACTTTGCACTGAACAACAACAAAGTGGTCAAGAAAGATACCTTTTGCCT 237
> AT1G21928.1 | Symbols: | Plant thionin family protein | chr1:7712211-7712513
REVERSE LENGTH=303
Length=303
Score = 318 bits (172), Expect = 2e-86
Identities = 216/237 (91%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 21 ATGGCAGCTCAAAGTTTGAAGAAAACATGCAATCTTCTGATTGTTACAGCTTTAATCACA 80
|||||||||||||||||||||||||||||| ||||||| || ||||| |||| || ||
Sbjct 1 ATGGCAGCTCAAAGTTTGAAGAAAACATGCGATCTTCTAATCATTACAACTTTGTTCGCA 60
Query 81 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAGATATGTGTATCAAACATTGT 140
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 61 ATGATGTTTTCGGCACAAATCTCACATTCGAATAATGTAAATATGTGTATTAAACATTGT 120
Query 141 GTCTCAAACCAATGTTTGAAAGAAGTTAAAAACGCTACTCCTACAATGTGCGAGGATGCT 200
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 GTCTCAAACCAATGCTTGAAAGAAGTTAAAAACGCTACTCCTATAATGTGCGAGGATGCT 180
Query 201 TGCAAAAAACTTTGCAATGACCTACAA-AA--TGGTAAAGAAAAATACATTGTGCCT 254
|||||||||||||||| ||| | |||| || |||| |||||| |||| ||||||||
Sbjct 181 TGCAAAAAACTTTGCACTGAACAACAACAAAGTGGTCAAGAAAGATACCTTGTGCCT 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15281395696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5