BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921197

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21950.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   542    1e-153


> AT1G21950.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G21940.1); 
Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7723259-7723954 
REVERSE LENGTH=696
Length=696

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 381/424 (90%), Gaps = 4/424 (1%)
 Strand=Plus/Plus

Query  3    TCCTGCAAAATTCCGATCGCCATGGATGATGGAGCTGTTGAGATACGTGAAGAGCAACGT  62
            |||||||||||| || ||||||||||||||||||||||||||| || |||||||||||||
Sbjct  71   TCCTGCAAAATTTCGGTCGCCATGGATGATGGAGCTGTTGAGAGACATGAAGAGCAACGT  130

Query  63   GACAGACGTGAAGAGAAACGTCGATTGATCGTTCGATTCGTCGCCGCAGTAGCGCTCGAT  122
            || ||||||||||||   |||||| ||  |||||| ||||||| |||||| |||||||||
Sbjct  131  GAGAGACGTGAAGAGCTTCGTCGAATGGCCGTTCGTTTCGTCGTCGCAGTGGCGCTCGAT  190

Query  123  CTTTTCACCGGAGTCTACAAACGAGCAGCTGGTTTCGACGGTTCAGATCCAAATTCGGGA  182
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  191  CTTTTCACTGGAGTCTACAAACGAGCAGCTGGTTTCGAAGGTTCAGATCCAAATTCGGGA  250

Query  183  ACGGAGACGACGGAGAACGAACACAGTGCGTTCTTTTGGGCAGCGATTTTCAACAAAGTA  242
            |||||||||||||||||||||||||| ||||||||||||||| ||  ||||||||||| |
Sbjct  251  ACGGAGACGACGGAGAACGAACACAGAGCGTTCTTTTGGGCATCGGGTTTCAACAAAGCA  310

Query  243  GCTCATTTAT-TTTGTATGTTGGTGATTTTTCAAATACTTTCCTCGGTGGTGGTGTTGGC  301
            |||||||| | ||| ||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct  311  GCTCATTTCTCTTT-TATGTTGGTGATTTTTCAAATCCTTGCATCGGTGGTGGTATTGGC  369

Query  302  ACGACGGATGCGAAGTCACCGAGAAGACTGCGATATGAAGCTTCTGGGTGG-TTTCATCA  360
            |||||| |||||||||  ||||||||||||||||||||||||| ||  ||| ||| ||  
Sbjct  370  ACGACGTATGCGAAGTTTCCGAGAAGACTGCGATATGAAGCTTTTGC-TGGGTTTAATTT  428

Query  361  GCGTAACGATCTCGCTCTGTCTCATGGCGTATCTTCGCTGGTGGGTAAGTTGTTAGTCGA  420
            |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||| 
Sbjct  429  GCGTAACGATCTCGCTCTCTCTTATGGCGTATCTTCGCTGGTGGGTGAGTTGTTAATCGT  488

Query  421  TCTC  424
            ||||
Sbjct  489  TCTC  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5