BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921219

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22065.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   326    8e-89


> AT1G22065.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G77885.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr1:7785776-7786391 FORWARD LENGTH=616
Length=616

 Score =  326 bits (176),  Expect = 8e-89
 Identities = 225/248 (91%), Gaps = 5/248 (2%)
 Strand=Plus/Plus

Query  4    CTGTGAACTTTTCG--AATATGTCGCTAGACGGATCAGGACTAGGAGGGATGGCTATGGC  61
            |||| ||||||| |  || ||||| ||||||||||| |||||||||||||||||||| ||
Sbjct  95   CTGTAAACTTTTTGATAACATGTCACTAGACGGATCGGGACTAGGAGGGATGGCTATAGC  154

Query  62   GGAGGCTTACACGGTGAGGAAGTTTCATAGAGAGAACATGAAGAGTATGATGGCTACCGC  121
            ||||| ||||||| |||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct  155  GGAGGTTTACACGATGAGGAAGTTTCATAGAGAGAACATGAAGAGTATAACGGCAACCGC  214

Query  122  GGCCACAAGTACCGCCGGTGGAATCGAAGAGAACGGTGGAGGATCTGGCCGGTGGTTCTT  181
            |||||| |  ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct  215  GGCCAC-A--ACCGCTGGTGGAATCGAAGAGAACGGTGGAGGATCTGGTCGATGGTTCTT  271

Query  182  TGGAAAGCTGAGCACCAAGAAAAACTCTGCTAAAGTTTGTGATCTTATGATCACGGAATA  241
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  272  TGGAAAGCTGAGCACCAAGAAAAACTCTGCTAAAGTTTGTGATCTTATGATTACAGAATA  331

Query  242  ATATATAA  249
            |  |||||
Sbjct  332  AGCTATAA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11963724262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5