BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921221
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22090.1 | Symbols: emb2204 | Protein of unknown function (D... 1103 0.0
AT3G25080.1 | Symbols: | Protein of unknown function (DUF626) ... 58.4 1e-07
> AT1G22090.1 | Symbols: emb2204 | Protein of unknown function
(DUF626) | chr1:7795708-7797425 FORWARD LENGTH=1176
Length=1176
Score = 1103 bits (597), Expect = 0.0
Identities = 762/842 (90%), Gaps = 10/842 (1%)
Strand=Plus/Plus
Query 103 TTCGTCACTTCGAGTGTGAAGGTAAG-TATCCTAAGTATCCTTATGGTTCCTTGGTCAAG 161
|||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 117 TTCGTCACTTTGAGTGTGAAGG-CAGTTATCCCAAGTATCCTTATGGTTCTTTGGTCAAG 175
Query 162 TTTTATGCAATGGTGGGGCTTCATCGTTACAATTTGTTGGAGGGGAAAAACTTGCAGCTC 221
||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 176 TTTTATGCAATGGTGGGACTTCATCGTTACAATGTGTTGGAGGGGAAAAATTTGCAGCTC 235
Query 222 GATACCCTAAAGAGTTTCAACATGAGAATTAATTGCGGTGCTGCCTCTTACTACATAACT 281
||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||| |||
Sbjct 236 GATACCCTAAAGAGTTTCAACATGAGAATCAATTGTGGTGCTTCTTCTTACTACATTACT 295
Query 282 TTGGATGCACGCGTTCCAGATAGCGGTTTGCAGCAAATCTTTCAGGTTCTAGTTCACGAA 341
|||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 296 TTGGCTGCACGCGTTCCAGATAGCGGTTTGAAGCAGATCTTTCAGGTTCTAGTTCATGAA 355
Query 342 GAGCGTCTTGGCAGTTTAGACGTGACGTGCACCGTTGCGAGACCTCGAGTGACCACCAGC 401
||||||||||||||||||||| |||| || || | || |||||||||||||| ||||
Sbjct 356 GAGCGTCTTGGCAGTTTAGACATGACATGTACTATCGCTAGACCTCGAGTGACTACCAAT 415
Query 402 GAGCCTTTCCTAGGTCGGCATAGCGAATTAGCCTATGATTATATGGACAATGATGAATTG 461
| |||||| ||| ||| ||| ||||||| || |||||||||||||||||||||||||||
Sbjct 416 GTGCCTTTTCTACGTCCGCACAGCGAATCAGAGTATGATTATATGGACAATGATGAATTG 475
Query 462 CCTAATTGGCCTTCAGAGATTGCTTTCAATGATAGAAAACGGTTTCACCTGGTGAAGGAA 521
||| | ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 476 CCTGACTGGCCTTCAGAGATTGCTTTCGATGATACAAAACGGTTTCATCTGGTGAAGGAA 535
Query 522 TCAGAGTTACGAGACAATGATTGGATTCGTCTATATTTGGAACTTACACTTGTTGCTCAC 581
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 536 TCAGAGTTGCGAGACAATGATTGGATTCGACTCTATTTGGAACTTACACTTGTTGCTCAC 595
Query 582 GATAGGTCTCTTACAGTTCACTATCTGTCCAAGTTGGAGATTGTGCAAGTGGTGATTGAA 641
||||||| |||||||||||||||||| ||| |||||||||||||| |||| | |||||||
Sbjct 596 GATAGGTTTCTTACAGTTCACTATCTCTCCCAGTTGGAGATTGTGAAAGTTGCGATTGAA 655
Query 642 GATGTGGAGCCGCCGAATGCGAGTCTCAACACCAAAACTACATTTGTCTACATAACTTAT 701
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAAGTGGAGCAACCGAATGCGAGTCTCAACACCAAAACTACATTTGTCTACATAACTTAT 715
Query 702 AAGGACTTGGCAAAGGCTCGGATTGGTGAGCCGGTTGATCGCAAAGCTATTGTTAGAAGA 761
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 716 AAGGACTTGGCAAAGGCTCAGATTGGTGAGCCGGTTGATCGCAAAGCTATTGTTAGAAAA 775
Query 762 ATCATCAAT-ATGAGTACGGGAATCTTGAGACTCCGGGGTGATTATTGGAGTGGAGAAA- 819
||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 ATCATCAATGA-GACTACGGGACTCTTGAGACTCCGGGGTGATTATTGGAGTGGAGAAAG 834
Query 820 AAGCTATGAAT-ACTGAGGAGGAGGAATCTATGCATCTCCCTGGTGGAGGAAAAGCTCTG 878
||| | ||| | ||| ||||||||||| ||||| ||||| ||| |||| ||||| || |
Sbjct 835 AAG-TGTGA-TCACTCCGGAGGAGGAATATATGCTTCTCCATGGCGGAGAAAAAGTTC-G 891
Query 879 AAT-AATGAGCAGCGTTCTAAAATGCTTAAGCGTCGTTTAGGTGTTCATAGACTTTGGCG 937
|| ||||||||||||||||||| |||||||||||| ||||||||||||| || |||||
Sbjct 892 AAACAATGAGCAGCGTTCTAAAAAACTTAAGCGTCGTGTAGGTGTTCATAGGCTATGGCG 951
Query 938 AT 939
||
Sbjct 952 AT 953
> AT3G25080.1 | Symbols: | Protein of unknown function (DUF626)
| chr3:9136631-9138052 FORWARD LENGTH=976
Length=976
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 260 TGCTGCCTCTTACTACATAACTTTGGATGCA 290
|||||||||||||||||||||||||||||||
Sbjct 270 TGCTGCCTCTTACTACATAACTTTGGATGCA 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5