BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921232
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22180.2 | Symbols: | Sec14p-like phosphatidylinositol tran... 1463 0.0
> AT1G22180.2 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:7828328-7830392 REVERSE LENGTH=1299
Length=1299
Score = 1463 bits (792), Expect = 0.0
Identities = 915/975 (94%), Gaps = 6/975 (1%)
Strand=Plus/Plus
Query 9 TTT-CAGAAAGATATGAATTCTGATTAC-GATAAATCATCTTCAAATGGAATTGAGAAAT 66
||| ||| |||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 236 TTTCCAGCAAGATATGAATTCTGATT-CTAATAAATCATCTTCAAATGGATTTGAGAAAT 294
Query 67 CTTTGCCACCAGACGAGTATCTAAACAAGATAAATGAAGTGAGGACTTTGCTAGGGCCAT 126
||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 295 CTTTGACACCAGAGGAGTATCTAAACAAGATAAATGAAGTGAGGACATTACTAGGGCCAT 354
Query 127 TGACTGAGAAGTCATCTGAGTTTTGTTCAGATGCTGCCATTACTCGGTATTTAACTGCGC 186
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 355 TGACTGAGAAGTCATCTGAGTTTTGTTCAGATGCCGCCATTACTCGGTATTTGGCTGCGC 414
Query 187 GTAATGGCCATGTCAAGAAAGCTACTAAAATGCTTAAAGAAACACTAAAATGGAGGGCTC 246
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 GTAACGGCCATGTCAAGAAAGCAACTAAAATGCTTAAAGAAACACTAAAATGGAGGGCTC 474
Query 247 AGTACAAACCTGAGGAGATTCGATGGGAGGAGATTGCACGAGAAGCTGAGACCGGGAAAA 306
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 475 AATACAAACCTGAGGAGATTCGATGGGAGGAGATAGCACGAGAAGCTGAGACCGGAAAAA 534
Query 307 TATACCGAGCTAATTGTACCGATAAGTATGGAAGACCAGTTCTTGTTATGAGACCAAGTT 366
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 535 TATACCGAGCTAATTGTACCGATAAGTATGGAAGAACAGTTCTTGTTATGAGACCAAGTT 594
Query 367 CCCAGAATACGAAATCGTATAAAGGGCAGATTAGATTCTTGGTGTACTGCATGGAAAATG 426
||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 595 GCCAGAATACAAAATCATATAAAGGGCAGATTAGAATCTTGGTGTACTGTATGGAAAATG 654
Query 427 CAATCTTGAATCTACCAGACAACCAAGAACAAATGGTTTGGCTAATCGATTTTCACGGTT 486
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 655 CAATCTTGAACCTACCAGATAACCAAGAGCAAATGGTTTGGCTAATCGATTTTCACGGTT 714
Query 487 TCAACATGTCGCATATATCCGTGAAAGTGTCTCGAGAAACCGCTCATGTGTTACAAGAAC 546
|||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 TCAACATGTCTCATATCTCCTTGAAAGTGTCTCGAGAAACCGCTCATGTGTTACAAGAAC 774
Query 547 ATTACCCTGAACGGTTAGGCTTGGCCATAGTATACAACCCGCCTAAGATTTTCGAATCGT 606
||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 775 ATTACCCTGAACGCTTAGGCTTGGCCATTGTATACAACCCGCCTAAGATTTTTGAGTCGT 834
Query 607 TTTATAAGATGGTGAAACCATTTCTAGAACCAAAGACCTGCAACAAGGTGAAATTTGTCT 666
||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct 835 TTTATAAGATGGTGAAACCATTTTTAGAGCCAAAGACCAGCAACAAGGTGAAATTTGTCT 894
Query 667 ACTCCGATGATAACATCAGCAAAAAGCTTCTCGAGGATCTTTTCGATATGGAGCAACTAG 726
|||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 895 ACTCAGATGATAACCTCAGCAACAAGCTTCTGGAGGATCTTTTCGATATGGAGCAACTCG 954
Query 727 AGGTTGCGTTTGGTGGAAAAAACAGCGATGCGGGGTTCAGTTTTGAGAAATATGCTGAGA 786
||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 955 AGGTTGCATTTGGTGGAAAAAACAGCGATGCGGGTTTCAATTTTGAGAAATATGCTGAGA 1014
Query 787 GAATGAGAGAGGATGATTTGAAGTTCTATGGAAACACCACAGTGTCATCAACCTCATCTC 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1015 GAATGAGAGAGGATGATTTGAAGTTCTATGGAAACACCACAGTGTCATCAACCTCAGCTC 1074
Query 847 ATTTGACCAACTCAGATTCTGAAGTTTTAGACTCTGAAATGAAGCAATTGGAGGACAAAG 906
||||||| ||||||||||||||||||| ||||||||| |||||| | |||||||||||||
Sbjct 1075 ATTTGACTAACTCAGATTCTGAAGTTTCAGACTCTGAGATGAAGTATTTGGAGGACAAAG 1134
Query 907 AAGATGAGAAGATCA-AGAACGGAACTTTGCATTCTCCTTTAGATACAACAAAAACCTAC 965
||||||||| || | |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1135 AAGATGAGACTAT-AGAGAATGGAACTTTGCAATCTCCTTTAGATACAACAAAAACCTAA 1193
Query 966 ACATGAAG-CCTAAA 979
||||||| ||||||
Sbjct 1194 ACATGAAATCCTAAA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5