BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921240

Length=1321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49510.1 | Symbols:  | F-box family protein | chr3:18353842-...   172    6e-42
  AT1G24792.1 | Symbols:  | pseudogene of UDP-3-O-acyl N-acetylgl...  73.1    6e-12
  AT1G25209.1 | Symbols:  | pseudogene of UDP-3-O-acyl N-acetylgl...  73.1    6e-12


> AT3G49510.1 | Symbols:  | F-box family protein | chr3:18353842-18356508 
FORWARD LENGTH=2038
Length=2038

 Score =  172 bits (93),  Expect = 6e-42
 Identities = 310/409 (76%), Gaps = 38/409 (9%)
 Strand=Plus/Plus

Query  99   GTGCGTTCCACTTGCAAATTGTGGAAAGCTTTAACCAAAGATTGGGT-TTTGG--GTAAA  155
            ||||| || ||||| |||  |||||| |||||| | ||| ||  | | |||||  | |||
Sbjct  128  GTGCGATCTACTTGTAAAAAGTGGAATGCTTTATCGAAAAATCAGATCTTTGGTAGAAAA  187

Query  156  GGAGCAGCTAGGGAGCAGTTTTTGGGGTTCATGACGATGGATTCAAAAGTTTGTTCACTG  215
              |||||| ||| | || ||| | | ||||||||   | ||||| | |||||||||  ||
Sbjct  188  ACAGCAGCAAGGAATCAATTTCTAGAGTTCATGATTCTAGATTCTAGAGTTTGTTCTTTG  247

Query  216  AGATTCCATCTT---TG---CCGCAATGAAG---ATGAAGAATTGGTTGATCTATCTATA  266
            |||||  |||||    |   ||| || ||||   | ||||| || ||||||| |||||| 
Sbjct  248  AGATTAGATCTTCAAGGAATCCGTAACGAAGACAAAGAAGACTTCGTTGATCCATCTATG  307

Query  267  AAGC-AGAT-AG-AT---T--TACTCA--ACCAAGTCGATATATATCAAGTCTTTCACTG  316
            |||| | || || ||   |  || | |  | |||||||| |||| |||||||| ||| ||
Sbjct  308  AAGCTA-ATAAGTATACCTAGTAATGATGATCAAGTCGAGATATCTCAAGTCTATCATTG  366

Query  317  CGACGGCTTATTGTTATGCGTCGGCAAAGATAACTC-AAGGCTCATTGTGTGGAACCCTT  375
            ||| ||||||||||||||| ||| |||||| ||||| || | || |||||||||| || |
Sbjct  367  CGATGGCTTATTGTTATGCATCGCCAAAGAGAACTCGAATG-TCTTTGTGTGGAATCCGT  425

Query  376  ATTTGGGTCAAAC-AAAGTGGA-TCGTACCCaa-aaa-a-aTT-CAC-GA-ACTCGACAC  427
            ||||||| ||||| ||| |||| ||| | |||| ||| | ||| ||| || | | |||| 
Sbjct  426  ATTTGGGGCAAACGAAA-TGGATTCG-A-CCAAGAAACACATTCCACAGATA-T-GACAG  480

Query  428  GTATGCTCTAGGATACGATATCAACCGTAACCACAAAATCTTGAGGTTT  476
            || |||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct  481  GTTTGCTCTTGGATACGACAACAACCGTAACCACAAAATCTTGAGGTTT  529


 Score = 80.5 bits (43),  Expect = 4e-14
 Identities = 120/155 (77%), Gaps = 13/155 (8%)
 Strand=Plus/Plus

Query  330   TTATGCGTCGGCAAAGATAACTCAAGG-CTCATTGTGTGGAACCCTTATTTGGGTCAAA-  387
             |||||| ||| | |||| |||||  || ||  | || ||||| || |||||| |||||| 
Sbjct  1187  TTATGCATCGCCGAAGACAACTC-GGGACTTGTGGTATGGAATCCGTATTTGTGTCAAAC  1245

Query  388   CAAAGTGGA-TCGTACCCa-aaa-aaaTT-CAC-GA-ACTCGACACGTATGCTCTAGGAT  441
             |||| |||| ||| ||  | ||| | ||| ||| || | | |||  || |||||| ||| 
Sbjct  1246  CAAA-TGGATTCG-ACTTAGAAACACATTCCACAGATA-T-GACGTGTTTGCTCTTGGAC  1301

Query  442   ACGATATCAACCGTAACCACAAAATCTTGAGGTTT  476
             |||| | ||||||||||||||||||||||||||||
Sbjct  1302  ACGACAACAACCGTAACCACAAAATCTTGAGGTTT  1336


> AT1G24792.1 | Symbols:  | pseudogene of UDP-3-O-acyl N-acetylglucosamine 
deacetylase family protein/F-box protein related 
| chr1:8766060-8767096 FORWARD LENGTH=1037
Length=1037

 Score = 73.1 bits (39),  Expect = 6e-12
 Identities = 47/51 (92%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  288  CAAGTCGATATATATCAAGTCTTTCACTGCGACGGCTTATTGTTATGCGTC  338
            ||| |||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct  289  CAATTCGAGATATATAAAGTCTCTCACTGCGACGGCTTATTGTTATGCGTC  339


> AT1G25209.1 | Symbols:  | pseudogene of UDP-3-O-acyl N-acetylglucosamine 
deacetylase family protein/F-box protein related 
| chr1:8831724-8832760 FORWARD LENGTH=1037
Length=1037

 Score = 73.1 bits (39),  Expect = 6e-12
 Identities = 47/51 (92%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  288  CAAGTCGATATATATCAAGTCTTTCACTGCGACGGCTTATTGTTATGCGTC  338
            ||| |||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct  289  CAATTCGAGATATATAAAGTCTCTCACTGCGACGGCTTATTGTTATGCGTC  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65009705775


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5