BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921258
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22420.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 597 9e-170
> AT1G22420.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:7916076-7917518 REVERSE LENGTH=1443
Length=1443
Score = 597 bits (323), Expect = 9e-170
Identities = 606/733 (83%), Gaps = 57/733 (8%)
Strand=Plus/Plus
Query 420 GAAGACGATATGAACCATGAACAGTTGCATGGGTCTACGTTGCCTCCTCTGTTCGCAAAT 479
||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||| ||||
Sbjct 400 GAAGACGATATGAACCAGGAACAGTTACATGGGTCTATGTTGCCTCCCCTGTTCGTAAAT 459
Query 480 -G-G-TGA-TG---------AGA-A-CATTCCTCCTTCACCAGTT-CAGC-CTCATT-CT 521
| | ||| || ||| | |||||||||| |||||||| |||| |||| |
Sbjct 460 GGTGATGAGTGCCAACAACAAGAGAGCATTCCTCCTCCACCAGTTCCAGCGAACATTACA 519
Query 522 CCAAACAATCAAGGAT-CAGAGAACATTACACCATCAGCAGTTCCAACGAGTGCACCGTT 580
|| || | | | | | ||| ||||||||||||| || ||||||| || |||||||||||
Sbjct 520 CC--ACCA-CCA-GTTCCAGCGAACATTACACCACCACCAGTTCCGACAAGTGCACCGTT 575
Query 581 CAGATCTTTTGAGTGGCTTATGTCTCCTAATAATCTACAAACAGAGAACATTCTACAACC 640
| | | |||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 576 CGGTTTTTTTGAGTGGGTTATGTCTCCTGATAATCTACAAACGGAGAACATTCAACAACC 635
Query 641 ACCAGTTCCAACGACTTTACCGTTCGAATCATTAGATCAGGCCAATTCTATGAACGATCT 700
|||| |||| ||||||||||||| || |||||||||| |||||||||||||| ||||||
Sbjct 636 ACCACTTCCGACGACTTTACCGTCCGGATCATTAGATTGGGCCAATTCTATGACCGATCT 695
Query 701 ACTATCAGAGGACATTCCTCCACCAG-TAATGGCGCCTTCACCGTACGGATCTTTATATT 759
|||||| |||| |||||||||||||| | | || | |||||||| ||| |||||||||||
Sbjct 696 ACTATCCGAGGGCATTCCTCCACCAGTTCA-GGTGACTTCACCGGACGAATCTTTATATT 754
Query 760 GGCAAG-TGCCAG-ATCCTCCAAACGGTCCACTCTCTCCGAGCTTGATTCAACGATCTCT 817
||| || |||||| || ||| ||||||||||||||||||||||||| | | ||||
Sbjct 755 GGC-AGTTGCCAGAAT-CTCTGAACGGTCCACTCTCTCCGAGCTTGA-T-GTTG-TCTC- 808
Query 818 CA-CACAA-G-T-TCCGGAAACTTCACAGTTATGGAGTGTAGACTGGCCTAATCCTCTCA 873
|| ||| | | |||||||| ||||| |||| |||||||||||| ||| ||||||||||
Sbjct 809 CAGTTCAACGTTCTCCGGAAAATTCACTGTTAGGGAGTGTAGACTTGCCAAATCCTCTCA 868
Query 874 ACGATATACGACCGGAGAACGTTCCACTACTGGTTCCGGCAGCTTCACCGCTATGGAGTC 933
|| |||||||||| ||||| ||||||| || ||| |||||||||||||| |||||||||
Sbjct 869 ACAATATACGACCAGAGAATGTTCCACCACAAGTTTCGGCAGCTTCACCGTTATGGAGTC 928
Query 934 TAGACTGGTCCAACTTTCCGAATTATCTACAACCAGAGAACGTTCTACCTTTCGTTCCGG 993
|||||| | | | || | ||||| |||||||||||||||| || ||| | |
Sbjct 929 TAGACT-G--C--C---CC-----A--TACAATCAGAGAACGTTCTACCGTTAGTTTCAG 973
Query 994 CGACTTCACCGTTAGACTGCCCAAATATC-CAGAACAATCTAC-A--AGAGAACGTTCCA 1049
||||||||||||||||||| |||||| | ||||||||||||| | |||||||||||||
Sbjct 974 CGACTTCACCGTTAGACTGGCCAAAT-CCTCAGAACAATCTACAACCAGAGAACGTTCCA 1032
Query 1050 CCATTGGTTCCGGCGACTTCACCGTCAATGAGTCTAGACTGGCCTAACTTTCAGAACACT 1109
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1033 CCACTGGTTCCGGCGACTTCACCGTCAATGAGTCTAGACTTTCCTAACTTTCAGAACACT 1092
Query 1110 CCAGCACCAGTTC 1122
||| ||| |||||
Sbjct 1093 CCACCACAAGTTC 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5