BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921259

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa...   200    4e-51


> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) 
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116

 Score =  200 bits (108),  Expect = 4e-51
 Identities = 138/152 (91%), Gaps = 3/152 (2%)
 Strand=Plus/Plus

Query  23    GGGG-GTGCCACAGATGGAGGTGACTTTCGAAGTGGACGCAAATGGGATTCTGCAAGTGA  81
             |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  1578  GGGGAGTGCCACAGATTGAGGTGACTTTCGAAGTGGACGCAAATGGGATCCTGCAGGTGA  1637

Query  82    ACA-CCGAAGACAAAGTTCCAAAGATGTCACAGTCAATTACAATAACGAACGATAAAGGT  140
             | | | |||||||||||| | |||| |||||| || ||||||||||||||||||||||||
Sbjct  1638  A-AGCTGAAGACAAAGTTGCTAAGACGTCACAATCGATTACAATAACGAACGATAAAGGT  1696

Query  141   CGTTTGACAGGAGAAGAGATTGATGAAATGAT  172
             |||||||||| |||||||||||| ||||||||
Sbjct  1697  CGTTTGACAGAAGAAGAGATTGAGGAAATGAT  1728



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5