BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921260

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa...   206    1e-52


> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) 
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116

 Score =  206 bits (111),  Expect = 1e-52
 Identities = 136/148 (92%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  1     CTCGAATCCCAAAAGTTCAGTAGATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACA  60
             |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct  1194  CTCGAATCCCAAAAGTTCAGCAGATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCA  1253

Query  61    AAGGAACTAACCCTGATGAGGTTTTGGCCTAT-ACAACCGCCGTCCAAGGTGGAGTATTA  119
             |||| |||||||||||||||| | ||||||||  |  |||| ||||||||||||||||||
Sbjct  1254  AAGGGACTAACCCTGATGAGGCTGTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTA  1312

Query  120   AGTGGTGAAGGTGGAGAAGAAACGCAAA  147
             ||||||||||||||||||||||| ||||
Sbjct  1313  AGTGGTGAAGGTGGAGAAGAAACACAAA  1340


 Score =  169 bits (91),  Expect = 2e-41
 Identities = 117/129 (91%), Gaps = 3/129 (2%)
 Strand=Plus/Plus

Query  173   GATCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTTAC  232
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1429  GATCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGAC  1488

Query  233   TATCAACGTCTATGAAG---AGATAAGCATGACGAAAGATAACCCCTAGCTCGGAAATTT  289
             |||||||||||| ||||   ||| |||||||||||||||||||| | |||| ||||| ||
Sbjct  1489  TATCAACGTCTACGAAGGCGAGAGAAGCATGACGAAAGATAACCGCGAGCTTGGAAAATT  1548

Query  290   CCAGCTCAC  298
             | | |||||
Sbjct  1549  CGATCTCAC  1557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13773363226


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5