BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921263 Length=400 Score E Sequences producing significant alignments: (Bits) Value AT5G49520.1 | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding prot... 636 0.0 > AT5G49520.1 | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding protein 48 | chr5:20090776-20093346 FORWARD LENGTH=1793 Length=1793 Score = 636 bits (344), Expect = 0.0 Identities = 376/391 (96%), Gaps = 4/391 (1%) Strand=Plus/Plus Query 12 CCTTTCCCCATGACTCCACGTGGACACATCGGAATGCTGACATCACCAATCCTAGATCAC 71 |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||| Sbjct 946 CCTTTCCCCATGACGCCACGTGGACACATCGGAATGCTCACGTCACCAATCCTAGACCAC 1005 Query 72 GGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGCCACGTTACTTGCTGACT 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 GGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGCCACGTTACTTGCTGACT 1065 Query 132 CAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAAATATGATCAATAGAAGC 191 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1066 CAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAAGTATGATCAATAGAAGA 1125 Query 192 TCATCCGATGGTACTTTCGTAAATCCAGAG-CCATCATCATCATTCCCCGGATTTGGTTA 250 ||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||| Sbjct 1126 TCATCCGATGGCACTTTCGTAAATCCAG-GTCCATCATCATCATTCCCCGGCTTTGGTTA 1184 Query 251 TGATATGTCACAAGCTTCTACATCAACTTCTTCTTCCATTAGAGATCATGGATTGCTTCA 310 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1185 TGATATGTCTCAAGCTTCTACTTCAACTTCTTCTTCCATTAGAGATCATGGATTGCTTCA 1244 Query 311 AGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACTCAAACCAATGAAGAGAA 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1245 AGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACTCAAACCAATGAAGAGAA 1304 Query 371 TAAGAAATGA-GCAACttttttttCCCGGGG 400 |||||||||| | || ||||||||||||||| Sbjct 1305 TAAGAAATGAAG-AAGTTTTTTTTCCCGGGG 1334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18900673624 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5