BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921263
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49520.1 | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding prot... 636 0.0
> AT5G49520.1 | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding protein
48 | chr5:20090776-20093346 FORWARD LENGTH=1793
Length=1793
Score = 636 bits (344), Expect = 0.0
Identities = 376/391 (96%), Gaps = 4/391 (1%)
Strand=Plus/Plus
Query 12 CCTTTCCCCATGACTCCACGTGGACACATCGGAATGCTGACATCACCAATCCTAGATCAC 71
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 946 CCTTTCCCCATGACGCCACGTGGACACATCGGAATGCTCACGTCACCAATCCTAGACCAC 1005
Query 72 GGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGCCACGTTACTTGCTGACT 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGCCACGTTACTTGCTGACT 1065
Query 132 CAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAAATATGATCAATAGAAGC 191
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1066 CAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAAGTATGATCAATAGAAGA 1125
Query 192 TCATCCGATGGTACTTTCGTAAATCCAGAG-CCATCATCATCATTCCCCGGATTTGGTTA 250
||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||||||
Sbjct 1126 TCATCCGATGGCACTTTCGTAAATCCAG-GTCCATCATCATCATTCCCCGGCTTTGGTTA 1184
Query 251 TGATATGTCACAAGCTTCTACATCAACTTCTTCTTCCATTAGAGATCATGGATTGCTTCA 310
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGATATGTCTCAAGCTTCTACTTCAACTTCTTCTTCCATTAGAGATCATGGATTGCTTCA 1244
Query 311 AGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACTCAAACCAATGAAGAGAA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACTCAAACCAATGAAGAGAA 1304
Query 371 TAAGAAATGA-GCAACttttttttCCCGGGG 400
|||||||||| | || |||||||||||||||
Sbjct 1305 TAAGAAATGAAG-AAGTTTTTTTTCCCGGGG 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18900673624
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5