BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921266
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22450.1 | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase 6... 979 0.0
> AT1G22450.1 | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase
6B | chr1:7925121-7927278 FORWARD LENGTH=1262
Length=1262
Score = 979 bits (530), Expect = 0.0
Identities = 593/623 (95%), Gaps = 6/623 (1%)
Strand=Plus/Plus
Query 1 CTTCTTTTGACCACACGC-TTCAATGGCGGAAGCTGTGACCGCTCAAACTCCATCGCTCT 59
|||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 304 CTTCTTTTGACCACACACTTTCAATGGCGGATGCTGTGAACGCTCAAACTCCATCGCTCT 363
Query 60 CCGAGCAATATCATTTGGAGAAAGAAGTGAAGCAAGATACAAGTGCAAAGCCTGTGGAAG 119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 364 CCGAGCAATATCATTTGGAGAAAGAAGTGAAGCAAGACACAAGTGCAAAGCCTGTTGAAG 423
Query 120 TGAAAGAGGTGGCACCAGAAGTTACTACACAAGCTGAAGAGGTTACCAAGGACCAAGCTA 179
||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 424 TGAAAGAGGTGGCACCAGAAGTTACTACACAAGCTGAAGAGGTTAAGACGGAGCAAGCTA 483
Query 180 AGGAAGAATCTCCTGTTGAGGAAGCGGTTTCTGCT-GTTGAAGAGAAGTCTGAATCTGCT 238
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 484 AGGAAGAATCTCCTGTTGAGGAAGCGGTTTCTG-TAGTTGAAGAGAAGTCTGAATCTGCT 542
Query 239 CCTGAGTCAACGGAAGTGACTTCTGAGGCTCCTGCTGCTGCAGCGGAAGACAATGCTGAA 298
||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 543 CCTGAATCAACGGAAGTGGCTTCTGAGGCT-C--CTGCTGCAGCGGAAGACAATGCTGAA 599
Query 299 GAGACCCCTCCTGCTGTTGAAGAAAATAATGACGAAAACACTAGTGAAGAAGTTGCTGAA 358
||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GAGACTCCTGCTGCTGCTGAAGAAAATAATGACGAAAACGCTAGTGAAGAAGTTGCTGAA 659
Query 359 GAAACCCCTGATGAGATCAAGCTTGAGACAGCTCCTGCTGATTTCCGTTTCCCGACAACA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 GAAACCCCTGATGAGATCAAGCTTGAGACAGCTCCTGCTGATTTCCGTTTCCCTACAACA 719
Query 419 AACCAAACAAGGCATTGTTTCACTCGTTACATCGAATATCACAGATGTGTAGCTGCTAAG 478
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 720 AACCAAACAAGGCATTGTTTCACTCGCTACGTTGAATATCACAGATGTGTAGCTGCTAAG 779
Query 479 GGTGACGATGCTCCAGAATGCGATAAGTTTGCAAAGTTTTATCGATCTCTTTGCCCCAGC 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGTGATGATGCTCCAGAATGCGATAAGTTTGCAAAGTTTTATCGATCTCTTTGCCCCAGC 839
Query 539 GAATGGGTTGATAGGTGGAACGAGCAAAGAGAAAATGGAACATTCCCTGGTCCTCTTCCC 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 GAATGGGTTGATAGGTGGAACGAGCAAAGAGAAAATGGAACATTCCCTGGTCCTCTACCC 899
Query 599 TGAAGAAGGATTATATTGCCATC 621
||||||| || |||||||||||
Sbjct 900 TGAAGAAAAATCATATTGCCATC 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5