BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921275

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22510.2 | Symbols:  | RING/U-box protein with domain of unk...   747    0.0  


> AT1G22510.2 | Symbols:  | RING/U-box protein with domain of unknown 
function (DUF 1232) | chr1:7950818-7952832 REVERSE LENGTH=1036
Length=1036

 Score =  747 bits (404),  Expect = 0.0
 Identities = 462/490 (94%), Gaps = 3/490 (1%)
 Strand=Plus/Plus

Query  110  CGGAAACTGCATTATGCTTGTTTGGAGGCATGGATCTACATTACGGCCATGCAAATGTCC  169
            ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  383  CGGGAACTGCATTATGCTAGTTTGGAGGCATGGATCTACATTACGGCCATGCAAATGTCC  442

Query  170  CTTGTGTCGTCGTCCGATTAGTTTACTAGTTCCTTCTGAGGAAACAGTGAGAAGTCGGAA  229
            |||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||
Sbjct  443  CTTGTGTCGTCGTCCGATAAGTTTGTTAGTTCCTTCTGAGGAAACAGTGAGAAGTCGGAA  502

Query  230  TGATGCTACGGTTTCCGAGGTTCTTCACGATGTTGAAACTTACAACCGAGTCTTTGGTGG  289
            ||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  503  TGATGCTACAGTTTCTGAGGTTCTTCATGATGTTGAAACTTACAACCGTGTCTTTGGTGG  562

Query  290  ACAGTCAAGTGGACTAATTC--AGGATGCAAGATCTTCCCTTCTTACTCCGAA-GTTGTT  346
            |||||||||||| || ||||  ||||||||||| ||||||||||||||||||| ||||||
Sbjct  563  ACAGTCAAGTGGCCTTATTCAGAGGATGCAAGACCTTCCCTTCTTACTCCGAAGGTTGTT  622

Query  347  GCGAGAAATGATGGATCCACGAAGAACGCTTCCACTCGTCATCAGAGCTCGTGTTTATAT  406
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  623  GCGAGAAATGATGGATCCACAAAGAACGCTTCCACTCGTCATCAGAGCTCGTGTTTATAT  682

Query  407  TGCGTTGATACTCAGTGCGATTTACATAATCAGCCCAATAGATATCATTCCTGAAGGAGT  466
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  683  TGCGTTGATACTCAGTGCGATTTACATAATCAGCCCAATAGATATCATTCCGGAAGGAGT  742

Query  467  CTTGGGGGTTATCGGTTTACTAGATGATCTACTTATAGCCCTGATTTGTTTCCTCCATGT  526
            |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  743  CTTGGGGGTTATCGGTTTACTAGATGATCTTCTCATAGCCCTGATTTGTTTCCTCCATGT  802

Query  527  GGCTGCCCTCTACCGATCCGTTCTCTATTTCCGTCATGGTGGTTCGTGAATGGCTTCGAA  586
             ||||| |||||||||||||||||||||| ||||||||||||||||||||   ||| |||
Sbjct  803  CGCTGCTCTCTACCGATCCGTTCTCTATTCCCGTCATGGTGGTTCGTGAACCTCTTTGAA  862

Query  587  ATTTTTACAT  596
             |||| ||||
Sbjct  863  GTTTTCACAT  872


 Score =  174 bits (94),  Expect = 7e-43
 Identities = 102/106 (96%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  7    AGAGGAAGACGACGATGAATGCGCCACCGGAGAACGAAGTTTGTTCGATATGCCATGGCC  66
            ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  222  AGACGAAGACGACAATGAATGCGCCACCGGAGAACGAACTTTGTTCGATATGCCATGGCC  281

Query  67   ACTTTAACGCTCCTTGCCAATCCAATTGCTCTCACTGGTTCTGCGG  112
            |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  282  ACTTCAACGCTCCTTGCCAATCCAATTGCTCTCACTGGTTCTGCGG  327



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28683697937


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5