BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921292
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 778 0.0
> AT1G22680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF688 (InterPro:IPR007789); BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71970.1);
Has 44 Blast hits to 44 proteins in 8 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:8024967-8026356 REVERSE LENGTH=1390
Length=1390
Score = 778 bits (421), Expect = 0.0
Identities = 550/608 (90%), Gaps = 25/608 (4%)
Strand=Plus/Plus
Query 1 CAAAACT-AACACTCTTCTCAATGGATACTTCCCCAAGGACCCGAATTGTA-C--CTAGA 56
||||||| |||||| || | |||||||||||| |||||||||||||||||| | |||||
Sbjct 276 CAAAACTAAACACTATTTTGAATGGATACTTCGCCAAGGACCCGAATTGTACCTACTAGA 335
Query 57 CGATCCGACTCGATCAAATTCTCATCGCCGGTTAACATTTCTACCCGGCGATCActctct 116
|||||| ||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 336 CGATCCAACTCGGTCAAATTCTCCTCGACGGTTAACATTTCAACCCGGCGATCACTCTCT 395
Query 117 tcctcctcttccaattctctcctattctccagcaactctccggcaacccctctccatccC 176
|||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 396 TCCTCCTCCTCCAATTCCCTCCTATTCTCCGGCAACTCTCCGGCAACTCCTCTCCATCCA 455
Query 177 CTTGGCGTCCCATTTTCATGGGAAAAGCTTCCCGGTAAACCTAAAGAGTTCCCATATCAC 236
|||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 456 CTTGGCATCCCATTTTCATGGGAAAAGCTTCCCGGTAAACCTAAAGAGTTCTCGTATCAC 515
Query 237 CGGAAAAACGAATCATCAAGCAACCTCTTGCCTCTCCCTCCTCACCGGAGTAACCATAAC 296
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
Sbjct 516 CGGAAAAACGAATCATTAAGCAACCTCTTGCCTCTCCCTCCTCACTGGAGTAACCATAGC 575
Query 297 CCCAACACCAGACGTAAGAAGAACACGTCTCCTGCGGCCATGAGAGATCCCTTCACGGCG 356
|| ||||||||| |||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct 576 CCTAACACCAGATGTAAGAAGAACACGTCCCCTGCGGCCATGAGAGATCCTTTCATGGCG 635
Query 357 GCGTTGGTAGAGTGTTCCAAA-G-GC-ACCAAC-GTCGGAGAACATACCGGCGGCGAATC 412
||||||||||||||||||||| | || ||| || | ||||||||||||||||||||||||
Sbjct 636 GCGTTGGTAGAGTGTTCCAAAGGCGCTACC-ACAGACGGAGAACATACCGGCGGCGAATC 694
Query 413 AAGGAAGGTCTTGAGGAAGAGCA--A-CATGGGGCTACTGAATCTTTACGCTTCTTGTAG 469
||||||||||||||||||||||| | ||| ||| |||||||||||||| ||||||||||
Sbjct 695 AAGGAAGGTCTTGAGGAAGAGCAGGAGCATCGGGTTACTGAATCTTTACTCTTCTTGTAG 754
Query 470 AAGAGCTTGTGCAGTTTCTGAATCCATTGTTTATCTCCCGAAGTCCATTGACCAAGTTGC 529
||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
Sbjct 755 AAGAGCTTGTGAAGTTTCTGAATCCATTGTTTATCTCCCGAAGTCCATTG-C----TT-C 808
Query 530 TTCATACGATCATCTTCTTCTCAGCACTCGT---CGTCGTAGCCGATGATTTATCACATT 586
| ||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||
Sbjct 809 --C-TACGATCATCTTCATCTCAGCACTCGTGGTCGTCGTCGCCGATGATTGATCACATT 865
Query 587 CGTCGATC 594
|||| |||
Sbjct 866 CGTC-ATC 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28683697937
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5