BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921292 Length=596 Score E Sequences producing significant alignments: (Bits) Value AT1G22680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 778 0.0 > AT1G22680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71970.1); Has 44 Blast hits to 44 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8024967-8026356 REVERSE LENGTH=1390 Length=1390 Score = 778 bits (421), Expect = 0.0 Identities = 550/608 (90%), Gaps = 25/608 (4%) Strand=Plus/Plus Query 1 CAAAACT-AACACTCTTCTCAATGGATACTTCCCCAAGGACCCGAATTGTA-C--CTAGA 56 ||||||| |||||| || | |||||||||||| |||||||||||||||||| | ||||| Sbjct 276 CAAAACTAAACACTATTTTGAATGGATACTTCGCCAAGGACCCGAATTGTACCTACTAGA 335 Query 57 CGATCCGACTCGATCAAATTCTCATCGCCGGTTAACATTTCTACCCGGCGATCActctct 116 |||||| ||||| |||||||||| ||| ||||||||||||| |||||||||||||||||| Sbjct 336 CGATCCAACTCGGTCAAATTCTCCTCGACGGTTAACATTTCAACCCGGCGATCACTCTCT 395 Query 117 tcctcctcttccaattctctcctattctccagcaactctccggcaacccctctccatccC 176 |||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||| Sbjct 396 TCCTCCTCCTCCAATTCCCTCCTATTCTCCGGCAACTCTCCGGCAACTCCTCTCCATCCA 455 Query 177 CTTGGCGTCCCATTTTCATGGGAAAAGCTTCCCGGTAAACCTAAAGAGTTCCCATATCAC 236 |||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 456 CTTGGCATCCCATTTTCATGGGAAAAGCTTCCCGGTAAACCTAAAGAGTTCTCGTATCAC 515 Query 237 CGGAAAAACGAATCATCAAGCAACCTCTTGCCTCTCCCTCCTCACCGGAGTAACCATAAC 296 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | Sbjct 516 CGGAAAAACGAATCATTAAGCAACCTCTTGCCTCTCCCTCCTCACTGGAGTAACCATAGC 575 Query 297 CCCAACACCAGACGTAAGAAGAACACGTCTCCTGCGGCCATGAGAGATCCCTTCACGGCG 356 || ||||||||| |||||||||||||||| |||||||||||||||||||| |||| |||| Sbjct 576 CCTAACACCAGATGTAAGAAGAACACGTCCCCTGCGGCCATGAGAGATCCTTTCATGGCG 635 Query 357 GCGTTGGTAGAGTGTTCCAAA-G-GC-ACCAAC-GTCGGAGAACATACCGGCGGCGAATC 412 ||||||||||||||||||||| | || ||| || | |||||||||||||||||||||||| Sbjct 636 GCGTTGGTAGAGTGTTCCAAAGGCGCTACC-ACAGACGGAGAACATACCGGCGGCGAATC 694 Query 413 AAGGAAGGTCTTGAGGAAGAGCA--A-CATGGGGCTACTGAATCTTTACGCTTCTTGTAG 469 ||||||||||||||||||||||| | ||| ||| |||||||||||||| |||||||||| Sbjct 695 AAGGAAGGTCTTGAGGAAGAGCAGGAGCATCGGGTTACTGAATCTTTACTCTTCTTGTAG 754 Query 470 AAGAGCTTGTGCAGTTTCTGAATCCATTGTTTATCTCCCGAAGTCCATTGACCAAGTTGC 529 ||||||||||| |||||||||||||||||||||||||||||||||||||| | || | Sbjct 755 AAGAGCTTGTGAAGTTTCTGAATCCATTGTTTATCTCCCGAAGTCCATTG-C----TT-C 808 Query 530 TTCATACGATCATCTTCTTCTCAGCACTCGT---CGTCGTAGCCGATGATTTATCACATT 586 | ||||||||||||| ||||||||||||| |||||| |||||||||| |||||||| Sbjct 809 --C-TACGATCATCTTCATCTCAGCACTCGTGGTCGTCGTCGCCGATGATTGATCACATT 865 Query 587 CGTCGATC 594 |||| ||| Sbjct 866 CGTC-ATC 872 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28683697937 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5