BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921297
Length=2120
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22730.1 | Symbols: | MA3 domain-containing protein | chr1:... 3491 0.0
> AT1G22730.1 | Symbols: | MA3 domain-containing protein | chr1:8046149-8049039
FORWARD LENGTH=2574
Length=2574
Score = 3491 bits (1890), Expect = 0.0
Identities = 2047/2124 (96%), Gaps = 5/2124 (0%)
Strand=Plus/Plus
Query 1 GATTCGAGAGAGAGTCTAAAATGGAGCACCAAGAAGTTGCTGATTCGA-AAACGGATCCT 59
||||||||| |||||||||||||||||||||||| || | ||||||| ||| |||||||
Sbjct 203 GATTCGAGATAGAGTCTAAAATGGAGCACCAAGACCTTACAGATTCGAGAAA-GGATCCT 261
Query 60 CTTTGCATTTCTCAATTGAAAATATCTTCTTC-TCT-T-GACCCATTGCCACAGGCGAAC 116
||||||||||||||||||||||| |||||||| ||| | ||||||||||| ||||| |||
Sbjct 262 CTTTGCATTTCTCAATTGAAAATTTCTTCTTCTTCTCTCGACCCATTGCCTCAGGCCAAC 321
Query 117 ATGACAGCGGATTTATTGAAGAGTCATAGACATTCACCTATAAAAGTGCAAGGGAGTGAA 176
||| ||| ||||||| ||||||| |||||||||||||||||||||| |||||||||||
Sbjct 322 ATGGCAGAGGATTTAACAAAGAGTCGTAGACATTCACCTATAAAAGTGGAAGGGAGTGAA 381
Query 177 GAAACTTGGGGAGTAGAAGATGATGATGACCTCACTGACCCTAATTTTGATACCGTTGAG 236
|||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 382 GAAACTTGGGGAGTAGAAGATGATGATGACCTTACTGACCCTATTTTTGATACCATTGAG 441
Query 237 GGCAATGGACATTCAGATCCAACTAGCTGCTTCGATGCTGATTTAAGTGAGTACAAAAAG 296
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 442 GGCAATGGACATTCAGATCCAACAAGCTGCTTCGATGCTGATTTAAGTGAGTACAAAAAG 501
Query 297 AAGGCCACGGTAATTGTGGAGGAATACTTTGGCACCAATGATGTTGTCTCAGTTGCTAAT 356
|||||||| ||||| || |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 502 AAGGCCACAGTAATCGTTGAGGAATACTTTGGCACCAATGATGTTGTCTCTGTTGTTAAT 561
Query 357 GAACTAAAGGAGCTTGGAATGCCTGAGTACCGTTATTATTTTGTCAAGAAATTAGTCTCC 416
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 562 GAACTAAAGGAGCTTGGAATGGCTGAGTACCGTTATTATTTTGTCAAGAAGTTAGTCTCC 621
Query 417 ATGGCTATGGATAGACATGACAAAGAGAAAGAAATGGCTGCTTTTCTCCTGTCTACGCTT 476
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 622 ATGGCTATGGATAGACATGACAAAGAGAAAGAAATGGCTGCTTTTCTCCTCTCTACCCTT 681
Query 477 TATGCCGACGTCATTGATCCCCCGGAAGTTTACAGAGGTTTTAACAAACTGGTGGCTTCT 536
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 682 TATGCCGACGTCATTGATCCCCCAGAAGTTTACAGAGGTTTCAACAAACTGGTCGCTTCT 741
Query 537 GCTGATGATTTATCTGTAGATATTCCCGATGCAGTTGATGTTCTTGCTGTCTTTGTGGCT 596
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GCTGATGATTTATCTGTTGATATTCCCGATGCAGTTGATGTTCTTGCTGTCTTTGTGGCT 801
Query 597 CGGGCAATTGTTGACGACATTCTTCCACCTGCGTTTCTGAAGAAACAAATGAAATTGCTA 656
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 802 CGGGCAATTGTTGACGACATTCTTCCTCCTGCGTTTCTCAAGAAGCAAATGAAATTGCTG 861
Query 657 CCAGATCACTCCAAAGGTGTTGAGGTTTTGAGAAAGGCCGAGAAGAGCTATCTAGCGACT 716
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 862 CCAGATAACTCCAAAGGTGTTGAGGTTTTGAGAAAGGCTGAGAAGAGCTATCTAGCGACT 921
Query 717 CCGCTTCATGCTGAAGTTGTTGAGAAGAGATGGGGAGGGACTGATAATTGGACTGCTGAG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 CCGCTTCATGCTGAAGTTGTTGAGAAGAGATGGGGAGGGACTGATAATTGGACTGCTGAG 981
Query 777 GATGTGAAAGCAAGAATAAACGACTTGCTGAAAGAGTATGTGATGAGTGGAGACAAAAAA 836
||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 982 GATGTGAAAGCTAGAATTAACGACTTGTTGAAAGAGTATGTCATGAGTGGAGACAAAAAA 1041
Query 837 GAAGCTTTTAGATGCATCAAAGGATTGAAAGTTCCTTTCTTTCATCATGAGATTGTCAAA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 GAAGCTTTTAGATGCATCAAAGGATTGAAAGTTCCTTTCTTTCATCATGAGATTGTCAAA 1101
Query 897 CGAGCACTGATTATGGCAATGGAAAGGCGAAAAGCTGAAGTCAGGCTGCTAGATCTGTTA 956
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1102 CGAGCACTGATCATGGCAATGGAAAGGCGAAAAGCTCAAGTCAGGCTGCTAGATCTGTTG 1161
Query 957 AAAGAAACGATTGAGGTTGGTCTCATAAACTCCACTCAAGTAACAAAAGGGTTTAGCAGA 1016
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1162 AAAGAAACGATTGAGGTTGGTCTCATAAACTCCACTCAGGTGACAAAAGGGTTTAGCAGA 1221
Query 1017 ATCATTGATTCAATTGAAGATTTGTCTCTTGACATACCAGATGCACGCCGTATATTACAG 1076
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1222 ATCATTGATTCAATCGAAGATTTGTCTCTTGACATACCAGACGCACGCCGTATTTTACAG 1281
Query 1077 TCTTTCATCTCTAAAGCAGCTTCTGAAGGATGGTTATGTGCTTCTTCTCTGAAATCACTC 1136
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 TCTTTCATCTCTAAAGCGGCTTCTGAAGGATGGTTATGTGCTTCTTCTCTGAAATCACTC 1341
Query 1137 TCCGCTGATGCAGGAGAAAAGTTACTTGAAAACTCCAGCGCCAATGTTTTTAAAGACAAG 1196
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 TCTGCTGATGCAGGAGAAAAGTTACTTGAAAACTCCAGCGCCAATGTTTTTAAAGACAAG 1401
Query 1197 GCGAAGTCGATCATCCGAGAGTATTTCCTTTCAGGTGACACTTCAGAGGTCGTACATTGT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GCGAAGTCGATCATCCGAGAGTATTTCCTTTCAGGTGACACTTCAGAGGTCGTACATTGT 1461
Query 1257 CTAGACACCGAATTGAATGCATCTTCGAGTCAGCTACGCGCAATCTTTGTCAAATATCTG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 CTAGACACCGAATTGAATGCATCTTCGAGTCAGCTACGCGCAATCTTTGTCAAATATCTG 1521
Query 1317 ATAACTCTAGCAATGGACAGGAAGAAAAGAGAGAAGGAGATGGCTTGTGTGCTCGTCTCT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 ATAACTCTAGCAATGGACAGGAAGAAAAGAGAGAAGGAGATGGCTTGTGTGCTCGTCTCT 1581
Query 1377 ACTCTTGGTTTCCCTCCAAAAGATGTCAGAAACGCATTCTCGATGCTCATAGAATCTGCA 1436
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1582 ACTCTTGGTTTCCCTCCCAAAGATGTCAGAAGCGCATTCTCGATGCTCATAGAATCTGCA 1641
Query 1437 GACGACACGGCTTTGGACAACCCAGTGGTTGTTGAAGACCTTGCCATGTTCTTAGCCAGA 1496
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1642 GACGACACTGCTTTGGACAACCCAGTGGTTGTTGAAGACCTTGCCATGTTCTTAGCAAGA 1701
Query 1497 GCTGTGGTTGACGAGGTGTTACCTCCACGGGATTTGGAAGAAGTGTTAAACCAGACTCCC 1556
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1702 GCTGTGGTTGACGAGGTGTTAGCTCCACGGGATTTGGAAGAAGTGTTAAATCAGACTCCC 1761
Query 1557 GAGGCAGGCTCAAGTGTGGGAGAGAAAGTGATTCAAATGGCGAAAACATTGCTGAAAGCA 1616
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1762 GAGGCAGGCTCAAGTGTGGGCGAGAAAGTGATTCAAATGGCGAAAACATTGCTGAAAGCA 1821
Query 1617 CGTCTTTCCGGTGAAAGGATCTTACGTTGCTGGGGAGGAGGAGGAATTGAGACAAACTCG 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 CGTCTTTCCGGTGAAAGGATCTTACGTTGCTGGGGAGGAGGAGGAATTGAGACAAACTCG 1881
Query 1677 CCAGGATCCACAGTGAAGGAAGTGAAAGAGAAGATCCAGATTCTTCTAGAAGAGTATGTC 1736
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 CCGGGATCCACAGTGAAGGAAGTGAAAGAGAAGATCCAGATTCTTCTAGAAGAGTATGTC 1941
Query 1737 TCTGGTGGAGACCTCAGAGAAGCTAGTAGGTGCGTGAAGGAACTGGGAATGCCGTTTTTT 1796
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1942 TCTGGTGGAGACCTCAGAGAAGCTAGTAGGTGCGTAAAGGAACTAGGAATGCCGTTTTTT 2001
Query 1797 CACCATGAAGTAGTGAAGAAGTCAGTAGTGAGGATCATAGAAGAGAAGGAGAACGAGGAA 1856
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2002 CACCACGAAGTAGTGAAGAAGTCAGTAGTGAGGATCATAGAAGAGAAGGAGAACGAGGAA 2061
Query 1857 CGGTTATGGAAGCTACTAAAAGTGTGTTTTGATTCAGGACTAGTGACGATATATCAGATG 1916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 CGGTTATGGAAGCTACTAAAAGTGTGTTTTGATTCAGGACTAGTGACGATATATCAGATG 2121
Query 1917 ACTAAAGGGTTTAAAAGAGTTGATGAATCGCTTGAAGATCTGTCTTTGGATGTCCCTGAT 1976
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2122 ACTAAAGGGTTTAAAAGAGTTGATGAATCACTTGAAGATCTGTCTTTGGATGTCCCTGAT 2181
Query 1977 GCTGCGAAAAAGTTTTCAAGTTGCGTCGAAAGAGGCAAGCTTGAAGGGTTCTTAGACGAA 2036
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2182 GCTGCCAAAAAGTTTTCAAGTTGCGTTGAAAGAGGCAAGCTTGAAGGGTTCTTGGACGAA 2241
Query 2037 TCATTCGCTTGTGAGGAATCACAAAGTAAGAAACAGAACGGCTCGTCTTCTTCGTCTGGA 2096
|||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 2242 TCATTCGCTTCTGAGGATTCGCAAAGTAAGAAACAGAACGGCTCGTCTTCTTCCTCTGGA 2301
Query 2097 TGATAACATTTGAGCACCAAACCT 2120
||||||||||||||||||| ||||
Sbjct 2302 TGATAACATTTGAGCACCATACCT 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105119941230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5