BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921304
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1114 0.0
> AT1G22790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G34010.1);
Has 67 Blast hits to 67 proteins in 12 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8069487-8071562
FORWARD LENGTH=1188
Length=1188
Score = 1114 bits (603), Expect = 0.0
Identities = 665/693 (96%), Gaps = 12/693 (2%)
Strand=Plus/Plus
Query 3 CAGATGAATAGAGCAACTAATGTTACTGGCAGTAGAAGGAGGGGGTTTATTCTCAGCGTC 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CAGATGAATAGAGCAACTAATGTTACTGGCAGTAGAAGGAGGGGGTTTATTCTCAGCGTC 308
Query 63 CGCGTCTGGGTATAGTAAGGGATTGACCCTTCTTTTCTCTGGTGATAAAGACGGAGATAG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 309 CGCGTCTGGGTATAGTAAGGGATTGACCCTTCTTTTCTCTGGTGATAAAGACGTAGATAG 368
Query 123 GCCCATGAGAGTTGTGCCGTGGAATCACTACCAGGTGGTTGACC-A-A----GAGGCTGA 176
||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||
Sbjct 369 GCCCATGAGAGTTGTCCCGTGGAATCACTACCAGGTGGTTGACCAAGAGCCTGAGGCTGA 428
Query 177 CCCTGTTCTTCAGCTGGATTCTATTAAGAACCGAGTTTCCCGCGGTTGCGCTGCTTCCTT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CCCTGTTCTTCAGCTGGATTCTATTAAGAACCGAGTTTCCCGCGGTTGCGCTGCTTCCTT 488
Query 237 CAGTTGTTTTGGTGGCGCTTCCGCGGGACTTGAGAGCCCATCTCCTCTTAAAGTAGAACC 296
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 489 CAGTTGTTTTGGTGGCGCTTCCGCGGGACTTGAGACCCCTTCTCCTCTTAAAGTTGAACC 548
Query 297 TGT---GCAGCAGCATCGTGAATTATCATCACCAGAGTCTGCTGTTGTTGTTGTTTCTGA 353
||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 549 TGTGCAGCAGCAGCATCGTGAAATATCATCACCAGAG--T-CTGTTGTTGTTGTTTCTGA 605
Query 354 AAAGGGCAAAGACCATATAAGTGAAGCTGATAATGGCAGCAGCAAAGAAGCTTTCAAACT 413
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AAAGGGTAAAGACCAAATAAGTGAAGCTGATAATGGCAGCAGCAAAGAAGCTTTCAAACT 665
Query 414 CTCATTGAGGAGTAGCTTGAAAAGGCCGTCTGTTGCGGAATCACGCTCTCTTGAGGATAT 473
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct 666 CTCGTTGAGGAGTAGCTTGAAGAGGCCCTCTGTTGCGGAATCACGCTCTCTAGAAGATAT 725
Query 474 ACAAGAATACGAGACGTTGACTGTGGATGGTAGCGATCTCACTGGTGACATGGCAAGGCG 533
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 726 AAAAGAATACGAGACGTTGAGTGTGGATGGTAGCGATCTCACTGGTGACATGGCAAGGCG 785
Query 534 GAAAGTTCAGTGGCCAGATGCTTGTGGTAGTGAACTCACTCAAGTTAGAGAATTTGAGCC 593
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GAAAGTTCAGTGGCCTGATGCTTGTGGTAGTGAACTCACTCAAGTTAGAGAATTTGAGCC 845
Query 594 GAGTGAGATGGGATTATCAGATGAAGAATGGGAGGTAGGACGACAAAGAACATGTTCGTG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GAGTGAGATGGGATTATCAGATGAAGAATGGGAGGTAGGACGACAAAGAACATGTTCGTG 905
Query 654 TGTGATCATGTAAATTCAGAAATCATCGGTATC 686
|||||||||||||||||||||||||||||||||
Sbjct 906 TGTGATCATGTAAATTCAGAAATCATCGGTATC 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33204771167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5