BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921305
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22800.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1711 0.0
> AT1G22800.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:8071935-8074357
FORWARD LENGTH=1471
Length=1471
Score = 1711 bits (926), Expect = 0.0
Identities = 1043/1100 (95%), Gaps = 6/1100 (1%)
Strand=Plus/Plus
Query 13 AGATAGAGATGTGGAGGATCAATTCACTGTACGGAAGAATTGGTATGCTTAGGA-GAGTA 71
||||||||||| |||||||||||||||||||||||||||||||| | | || | |||||
Sbjct 78 AGATAGAGATGCGGAGGATCAATTCACTGTACGGAAGAATTGGTCT-CCTAAAACGAGTA 136
Query 72 CCCGAAG-AATCTACGAAGAAATCTCATACATTGCTCGCCTCTCTCTCCTTCTCTACGGA 130
|||| || ||||||||||| || |||||||||| ||||| ||||||||||||||||||||
Sbjct 137 CCCG-AGAAATCTACGAAGCAAGCTCATACATTTCTCGCATCTCTCTCCTTCTCTACGGA 195
Query 131 AGGTAG-TTATGGCGGTGACGGTGAGCTTCAGCAGAACAGCTCCAAAGTCAAGATCTTTG 189
|||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 196 AGGT-GCTTATGGCGGTGACGGTGAGTTTCAGCAGAACAGCTCCAAAGTCAAGATCTTTG 254
Query 190 ATCGAGATCTCAAGCGAATACATCGTGATCGAGCGGCGTGGCTTTCTCGCCaaaaaaaCG 249
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 ACCGAGACCTCAAGCGAATACATCGTGATCGAGCGGCGTGGCTTTCTCGCCAAAAAAACG 314
Query 250 ATTCCTTTGTCGACGCTGTTGCAGAGAATCTACTTGACCGCTTAGAGGATTGTAAGAAGA 309
|||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 315 ATTCTTTTGTTGACGCTGTTGCAGATAATCTACTTGATCGCTTAGAGGATTGTAAGAAGA 374
Query 310 GCTTTCCCACTGCATTTTGTTTGGGAGGATCTCTTGGTGCTGTTAAGCGATTACTACGTG 369
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 375 GTTTTCCCACTGCATTTTGTTTGGGAGGATCTCTTGGTGCTGTTAAGAGATTACTACGTG 434
Query 370 GTCGCGGTGGGATTGAGAAGCTTATCATGATGGATACTTCATATGACATGATTAAATCAT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 435 GTCGCGGTGGGATTGAGAAGCTTATCATGATGGATACTTCATATGACATGATTAAGTCAT 494
Query 430 GTAGAGATGCTCAAGAGGATTCACTCGATAACTCCATTGAAACATCTTATTTTGTTGGTG 489
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 495 GTAGAGATGCTCAAGACGATTCACTCGATAACTCCATTGAAACCTCTTACTTTGTTGGTG 554
Query 490 ATGAAGAGTTTCTGCCAGTCAAAGAGAGTTCGGTTGATTTGATCATAAGTTCGTTGGGGC 549
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 555 ATGAAGAGTTTCTGCCAGTCAAAGAGAGTTCGGTTGATTTGATCATTAGTTCGTTGGGGC 614
Query 550 TTCATTGGACAAATGATCTTCCTGGTTCCATGATACAGTGCAAACTAGCGCTGAAGCCTG 609
|||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 615 TTCACTGGACAAATGATCTTCCTGGATCCATGATACAGTGCAAGCTAGCACTGAAGCCGG 674
Query 610 ATGGCCTATTTTTAGCAGCGATTCTTGGCGGAGAGACCTTAAAGGAACTGAGAATAGCAT 669
||||| ||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||
Sbjct 675 ATGGCTTATTTTTAGCAGCAATTCTTGGTGGAGAAACCTTAAAGGAGCTGAGAATAGCAT 734
Query 670 GCACTTTGGCTCACATGGAGCGGGAAGGAGGCATTAGTCCCCGGCTATCGCCTTTGGCAC 729
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 735 GCACTTTGGCTCACATGGAGCGGGAAGGAGGGATTAGTCCTCGGCTATCACCTTTGGCAC 794
Query 730 AGGTCAGGGACGCAGGGAATCTCTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGACG 789
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 795 AGGTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATG 854
Query 790 TTGATGAATATGTAGTTAAATACAATAGTGCGATGGATCTTATAGAGCATCTTCGTGCGA 849
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 855 TTGATGAATATGTAGTTAAATACAAGAGAGCGATGGATCTTATAGAGCATCTTCGTGCGA 914
Query 850 TGGGTGAAACAAATGCTCTTCTCGAGAGAAACAAGATTTTGAATCGCGAAACTGCTCTTG 909
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 915 TGGGTGAAACCAATGCTCTTCTCGAGAGAAACAAGATTTTGAATCGTGAAACTGCTGTTG 974
Query 910 CCACGGCAGCCATATATGACTCCATGTTTGCCACAGAGGACGGCACTATACCTGCTACTT 969
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 975 CCACGGCAGCCATATATGACTCCATGTTTGCCACAGAGGACGGCACTATACCCGCTACTT 1034
Query 970 TTCAGGTGATTTACATGACAGGATGGAGAGAACATTCGTCTCACCCGCAGGCCAAACGAA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TTCAGGTGATTTACATGACAGGATGGAGAGAACATTCGTCTCACCCGCAGGCCAAACGAA 1094
Query 1030 GAGGTTCAGCCACCGTATCCTTCACTGATCTCCAGAAGCAATTTGGCGGTCAATCCTGAT 1089
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 1095 GAGGTTCAGCCACCGTATCCTTCACGGATCTCCAAAAGCAATTTGGCGGACAATCTTGAT 1154
Query 1090 GGAATGATTAAAGAGGAGAA 1109
||||||||| |||| |||||
Sbjct 1155 GGAATGATTGAAGAAGAGAA 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5