BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921306
Length=484
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22810.1 | Symbols: | Integrase-type DNA-binding superfamil... 555 2e-157
AT1G33760.1 | Symbols: | Integrase-type DNA-binding superfamil... 60.2 2e-08
> AT1G22810.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:8074231-8075037 REVERSE LENGTH=807
Length=807
Score = 555 bits (300), Expect = 2e-157
Identities = 408/457 (89%), Gaps = 19/457 (4%)
Strand=Plus/Plus
Query 14 ACAAAAAATGGATTACAGAG-A--CGCCGGTGAAACTCAGTCAAAGTACAAAGGAATCCG 70
|||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||||
Sbjct 62 ACAAAAAATGGATTACAGAGAATCCACCGGTGAAAGTCAGTCAAAGTACAAAGGAATCCG 121
Query 71 TCGTCGGAAATGGGGCAAATGGGTATCGGAGATTAGAGTTCCGGGAACTCGTGACCGTCT 130
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 122 TCGTCGGAAATGGGGCAAATGGGTATCAGAGATTAGAGTTCCGGGAACTCGTGACCGTCT 181
Query 131 CTGGTTAGGTTCATTCTCAACCGCCGAAGGCGCCGCCGTAGCACACGACGTTGCTTTCTT 190
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 182 CTGGTTAGGTTCATTCTCAACAGCAGAAGGTGCCGCCGTAGCACACGACGTTGCTTTCTT 241
Query 191 CTGTTTACACCAACCTGATTCGTTAGAATCTCTCAATTTTCCTCATTTGCTTAATCCTTC 250
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 242 CTGTTTACACCAACCTGATTCTTTAGAATCTCTCAATTTCCCTCATTTGCTTAATCCTTC 301
Query 251 AATCGTTTCCA-AATCTTCGCCGAGGTCTATCCAGCAAGCTGCTTCTAATGCCGGAATGG 309
| ||||||||| || |||| ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 302 ACTCGTTTCCAGAA-CTTCTCCGAGATCTATCCAGCAAGCTGCTTCTAACGCCGGCATGG 360
Query 310 CCATCGACGCCGGGATCGTTCACAGTAACGGTGGTTTTGTGTCGGGAAATTCTGGGTGTG 369
|||| |||||||| ||||| ||||||| | | | | | || | |||| || |
Sbjct 361 CCATTGACGCCGGAATCGTCCACAGTACCAGCG-T---G-------AACT-CTGGATGCG 408
Query 370 GTGATACGACGACGTATTGTGTGAATGGAGCTG-TGGAAATGGAGCCGTTGAATATTTCA 428
| |||||||||||||||| | ||||||||||| | || ||||||||||||||||||||
Sbjct 409 GAGATACGACGACGTATTACGAGAATGGAGCTGATC-AAGTGGAGCCGTTGAATATTTCA 467
Query 429 GTGTATGATTATCTGGACGGTCACGATCACGTTTGAT 465
|||||||||||||||| ||| ||||||||||||||||
Sbjct 468 GTGTATGATTATCTGGGCGGCCACGATCACGTTTGAT 504
> AT1G33760.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:12237878-12238598 FORWARD LENGTH=721
Length=721
Score = 60.2 bits (32), Expect = 2e-08
Identities = 42/47 (89%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 57 TACAAAGGAATCCGTCGTCGGAAATGGGGCAAATGGGTATCGGAGAT 103
|||| ||| || ||||| ||||||||||||||||||||||||||||
Sbjct 124 TACAGAGGCATTCGTCGGAGGAAATGGGGCAAATGGGTATCGGAGAT 170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23057473473
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5