BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921308

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22840.1 | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 | chr1...   708    0.0  


> AT1G22840.1 | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 | chr1:8079287-8080574 
FORWARD LENGTH=730
Length=730

 Score =  708 bits (383),  Expect = 0.0
 Identities = 419/436 (96%), Gaps = 3/436 (1%)
 Strand=Plus/Plus

Query  3    GCAAGCTCCAAAGAAACGAGAGTTCCGTAATCATTTTCTCTTGTTGTTCCTGATCGCGTT  62
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  23   GCAAGCTCCAGAGAAACGAGAGTTCCGTAATCATTTTCTCTTGTTGTTCCTGATCGCGTA  82

Query  63   GCTCAAGCG-AAAAAATGGCGTCGTTTGATGAAGCACCACCAGGAAACGCCAAAGCCGGT  121
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  83   GCTCAAGCGAAAAAAATGGCGTCGTTTGATGAAGCACCACCAGGAAACGCCAAGGCCGGT  142

Query  122  GAGAAGATCTTCAGGACCAAGTGTGCTCAGTGTCACACCGTCGAA-CAAGGCGCCGGTCA  180
            ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  143  GAGAAGATCTTCAGGACCAAGTGTGCTCAGTGTCACACCGTCGAAGCA-GGCGCCGGTCA  201

Query  181  CAAACAAGGACCAAATCTAAACGGTCTCTTTGGAAGACAATCTGGTACAACTGCTGGTTA  240
            |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  202  CAAACAAGGACCCAATCTAAACGGTCTATTTGGAAGACAATCTGGTACAACTGCTGGTTA  261

Query  241  CTCTTACTCTGCTGCTAACAAGAACAAAGCTGTCGAATGGGAAGAGAAGACCTTGTATGA  300
            ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct  262  CTCTTACTCTGCTGCTAACAAGAACAAAGCTGTGGAATGGGAAGAGAAGGCCTTGTACGA  321

Query  301  TTACTTGCTCAACCCCAAGAAGTACATACCAGGTACAAAGATGGTGTTCCCTGGGCTAAA  360
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  322  TTACTTGCTCAACCCCAAGAAGTACATACCAGGTACCAAGATGGTGTTCCCTGGGCTAAA  381

Query  361  GAAGCCGCAAGACCGCGCTGATCTCATTGCCTACTTGAAGGAATCTACTGGGCCTAAGTG  420
            ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  382  GAAGCCGCAAGACCGTGCTGATCTCATCGCCTACTTGAAGGAATCTACTGCGCCTAAGTG  441

Query  421  ATTCTAATGGTGGATT  436
            | ||| ||||||||||
Sbjct  442  AATCTGATGGTGGATT  457



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21011919082


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5