BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921317
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1175 0.0
> AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105589-8108164 FORWARD LENGTH=1478
Length=1478
Score = 1175 bits (636), Expect = 0.0
Identities = 748/800 (94%), Gaps = 15/800 (2%)
Strand=Plus/Plus
Query 7 GATCGGAGa--aaaaaaTGGCGGGAGGAATAGGGTTAGGAGACACGACGCACACGAAGGT 64
||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 204 GATCGGAGAGGAAAAAATGGCGGGAGGAATAGGGCTGGGAGACACGACATACACGAAGGT 263
Query 65 GTTTGTGGGAGGATTAGCTTGGGAGACACATAAGGAGACGATGAAGAAGCACTTTGAGCA 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 264 GTTTGTGGGAGGATTAGCTTGGGAGACGCATAAGGAGACGATGAAGAAGCACTTTGAGCA 323
Query 125 GTTTGGAGAGATTTTGGAAGCTGTGGTTATCACCGACAAGGCCTCTGGCAGATCCAAGGG 184
||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||
Sbjct 324 GTTTGGAGAGATTTTGGAAGCCGTAGTCATCACCGACAAGGCCTCCGGTAGATCCAAGGG 383
Query 185 CTACGGATTTGTGACATTCAGGGAAGCGGAGGCGGCGAGGAGAGCTTGTGTGGAGGCTAC 244
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 384 CTACGGATTCGTGACATTCAGGGAAGCGGAGGCGGCGAGGAGTGCTTGTGTGGATGCTAC 443
Query 245 TCCGGTGATCGACGGGAGAAGAGCAAATTGCAACCTTGCCTCTCTCGGTCTTCAAAGATC 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 444 TCCGGTGATCGACGGGAGAAGAGCAAATTGCAACCTCGCCTCTCTCGGTCTTCAAAGATC 503
Query 305 CAAACCATCCACTCCTAACCATGGAGGAGGAGGCAGGATTAACAATATGAGAGTGATGAT 364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CAAACCCTCCACTCCTAACCATGGAGGAGGAGGCAGGATTAACAATATGAGAGTGATGAT 563
Query 365 GAGCACAATGCAGACTGGTTTTGGaccacctccaccaccaccacaaccacccaccTTCCC 424
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
Sbjct 564 GAGCACAATGCAGACTGGTTTTGGACCACCTCCACCACCAC-A-A-CCACCCACCTTCAC 620
Query 425 TCACTATCCCCATCTCCCTCTCAATCTCTTTGGGTACTCTCCATACTCGCCAGATTACTT 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 621 TCACTATCCCCATCTCCCTCTCAATCTCTTTGGGTACTCTCCATACTCGCCAGACTACTC 680
Query 485 ATCATTCCCTACGAACTTATACGGCATGTACGGCTGTACTTCTGGAGGACAATACGGAGT 544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 681 ATCATTCCCTACGAACTTATACGGCATGTACGGCTGCACTTCTGGAGGACAATACGGAGT 740
Query 545 CTATGGAAACCGAAACGGTGGAGGCGGTGGACTAACGGCAGCAGCCGCATCTGCCGCTCC 604
|||||||||| ||||| | ||||||||||||||||| |||||||||||||| || ||||
Sbjct 741 CTATGGAAACAGAAACAGCGGAGGCGGTGGACTAACCGCAGCAGCCGCATCCGCTACTCC 800
Query 605 TTTTTATCCTTGCGGTGGAGTACATGCACATGCTGGAGTCCAGTTCTCTCAGCCACAACC 664
|||||||||||| ||||||| ||||| || || |||||||||||||| ||||||||
Sbjct 801 TTTTTATCCTTGTGGTGGAGGACATGG---TG--GG-GTCCAGTTCTCTCAACCACAACC 854
Query 665 ATTTTATCATCACTTGTCTTCTTATAACCCTCACCATTACTCTCCTCAGACCTTTTCTAT 724
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 855 ATTTTATCATCACTTGTCTTCTTATAACCCTCACCATTACTCTCCTCCGACCTTTTCTAT 914
Query 725 GCAACAAGG--CG--TAACCGGCTTTCCCCTTCAGGCACCTCTCATTCCTTACCGTTAAA 780
||||||||| || |||| |||||||| ||||| ||||||| ||||||||||||||||
Sbjct 915 GCAACAAGGTTCGCGTAACAGGCTTTCCGCTTCAACCACCTCTTATTCCTTACCGTTAAA 974
Query 781 GAAGCTTAGAGTCATTGGTA 800
||||||||||||| ||||||
Sbjct 975 GAAGCTTAGAGTCTTTGGTA 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5