BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921327
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23000.1 | Symbols: | Heavy metal transport/detoxification ... 1565 0.0
> AT1G23000.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr1:8143404-8145070 FORWARD LENGTH=1492
Length=1492
Score = 1565 bits (847), Expect = 0.0
Identities = 1037/1126 (92%), Gaps = 23/1126 (2%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTTCTTCTGAAGCCATGACTAAAGATGAAGACTTTAAGCTCCTAAAGATCCT 60
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCTTATTCTTTCTTCTTAAGCCATGACTAAAGATGAAGACTTTAAGCTCCTAAAGATCCA 248
Query 61 GACGTTTTCCCTCAGGGTCAACATCCATTGCGAGGGCTGTAACAAGAAAGTCAAGAAACT 120
||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 249 GACGTTTTCACTCAGAGTCAACATTCACTGCGAGGGCTGTAACAAGAAAGTCAAGAAACT 308
Query 121 TCTTCAGAGGATCGAAGGAGTTTGCCACGTGAAGATAGAAGCAGAGCATCAAAAGGTGAC 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 309 TCTTCAGAGGATCGAAGGAGTTTGCCACGTGAAGATAGAAGCAGAACATCAAAAGGTGAC 368
Query 181 TGTTACAGGGTCAGTTGACTCAGCCACACTCATCAACAAGCTCGTTAAAGCCGGCAAATA 240
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 369 TGTTTCAGGGTCAGTTGACTCAGCCACACTCATCAACAAGCTTGTTAAAGCCGGGAAACA 428
Query 241 CGCCGAGCTCTGGTCTCCTAACCCAAACCAAAACCAACCTCAAAAGCCCAAGACTAATGA 300
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 429 CGCCGAGCTTTGGTCTCCTAACCCAAACCAAAACCAGCCTCAAAAGCCCAAGACTAACGA 488
Query 301 CGTCATCAAGAACGTTAATCAAAAGGGTCAGAAGCAAGGCTCGGCCAAAAGTGGTATTGA 360
| |||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 489 CTTCATCAAGAACGTTAATCAAAAGGGTCAGAAGCAGGGGTCTGCCAAAAGTGGTATTGA 548
Query 361 AGCCTGCAAGCCCAAGAACGGCCCTAAAGGTGCAGCCTTTGTCA-CGGACGTGGAAGGAG 419
|||||| || |||||||||||||||||||||||||||||||| | | || | || ||||
Sbjct 549 AGCCTGTAAACCCAAGAACGGCCCTAAAGGTGCAGCCTTTGT-AGCTGAGGAAGATGGAG 607
Query 420 ACGGCGGCGAGGAAGAAGACGGAGAGGTCCAGTTTCCTAAACCGGCGAATCAGCAGCA-- 477
| ||| | || || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 608 ATGGCAGTGAAGAGGAAGACGGAGATGTCCAGTTTCCTAAACCGGCGAATCAGCAGCAGC 667
Query 478 A-CAGACCGTCGTCAACTCCAAGAAAAACAATGGAGGAGTTTCGATGAACAATGGAAACA 536
| || | |||||||||| |||||||||||| |||||||| | ||||||||||||||||||
Sbjct 668 AACAAAACGTCGTCAACGCCAAGAAAAACAGTGGAGGAGCTGCGATGAACAATGGAAACA 727
Query 537 ACGGAGTCAACGCCGCAACAAAGAAAGTCAACCAAAAACAGAGCAACCA-AATCCAGAAC 595
||||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 728 ACGGAGTCAACGCAGCATCAAAGAAAGTCAACCAAAAACAGAGCAACCATAA-CCAGAAC 786
Query 596 ACTCAACAAGTAATGGCGGCTATGAGAATGAGAACCGCCGGAAAAATGACCTCTGGTGTT 655
||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 787 ACTCAACAAGTAATGGCGGCTATGAGAATGAGAACCGCCGGGAAAATGAGCACTGGTGTT 846
Query 656 GAAACCAACGAGATTGGAGCTCTCATGGGT-TTAGCTGGCTTTAACGGCGCAACAAATGC 714
||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||
Sbjct 847 GAAGCCAACGAGATTGGAGCTCTCATGGGTCTT-GCTGGCTTCAACGGCGCAACCAACGC 905
Query 715 CGTGAATCACCCTCCAAATGGGATTCAACAACAGCTTCAAGCTCCACCGTTAAACAACGT 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AGTGAATCACCCTCCAAATGGGATTCAACAACAGCTTCAAGCTCCACCGTTAAACAACGT 965
Query 775 CA-C----T-A--A-TCACAACCTCACCAATGGTAATGGAGGCTTGATGATGAACATGAA 825
|| | | | | |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 966 CAACGGCGTCACTAATCACAACCTCACCAATAGTAATGGAGGCATGATGATGAACATGAA 1025
Query 826 TGGATACAACAATCATCATCCAATGAACATGCAGAGTAGGCAAATGATGCATCAGCCTCA 885
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TGGGTACAATAATCATCATCCAATGAACATGCAGAGTAGGCAAATGATGCATCAGCCTCA 1085
Query 886 GCAAATGATGTATCAAAGATCATCCTTCGTTCCAGCATCAAGCAATGGGTATTATTACAA 945
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1086 GCAAATGATGTACCAAAGATCATCTTTCGTTCCAGCATCAAGCAATGGGTATTATTACAA 1145
Query 946 TTATACCCCTAATCCCTACAGTTATTATCCATATTACCCTTACCCAAGTGAGCAGCAACA 1005
||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| | ||
Sbjct 1146 TTATACCCCTAGTCCCTACAGTTATTATCCTTATTACCCTTACGCAAGTGATCAGTACCA 1205
Query 1006 GCAACAAAGTAGCCATTCATATGCAACAAACATGTCTAGTGATGAAGACAGTACTAGCAA 1065
||||||||||| |||||| |||||||||||||||||||||| |||||| | || | ||
Sbjct 1206 ACAACAAAGTAGTCATTCACATGCAACAAACATGTCTAGTGAAGAAGAC-G--CTGGTAA 1262
Query 1066 TAACAATAGCTGCAACATCATGTAAAGTGTG-ATTGCTTGCTAAGG 1110
||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1263 TAACAATAGCTGCAACATCATGTAAAGTGTGGAT-GCTTGCTAAGG 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5