BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921331

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52320.1 | Symbols:  | F-box and associated interaction doma...   156    1e-37


> AT3G52320.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:19403020-19404192 REVERSE LENGTH=1173
Length=1173

 Score =  156 bits (84),  Expect = 1e-37
 Identities = 132/155 (85%), Gaps = 4/155 (3%)
 Strand=Plus/Plus

Query  67   ATCAGATTGCCGGCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGGCTCTCA  126
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  109  ATCAGATTGCCGGCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGGCTTTCC  168

Query  127  CTCATCTTATCTCGTTACTTGACCAACCGATTCCTTAAACCCTCACCACGAAGTCGTTAT  186
            || |||   ||||| ||||| |||||||| ||| ||||||||||| ||| |||| ||| |
Sbjct  169  CTTATCACCTCTCGATACTTCACCAACCGTTTCTTTAAACCCTCATCACCAAGTTGTT-T  227

Query  187  CT-CGCCTATTTTGTGGATAGCGAGAAA-CATAGC  219
             | ||| ||| ||||||| || || ||| || |||
Sbjct  228  GTTCGCGTATCTTGTGGACAGGGA-AAATCAGAGC  261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5