BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921335
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23070.1 | Symbols: | Protein of unknown function (DUF300) ... 1991 0.0
> AT1G23070.1 | Symbols: | Protein of unknown function (DUF300)
| chr1:8173823-8175819 REVERSE LENGTH=1461
Length=1461
Score = 1991 bits (1078), Expect = 0.0
Identities = 1196/1255 (95%), Gaps = 0/1255 (0%)
Strand=Plus/Plus
Query 1 TATGTATAAAATTTTGGAAGAATGGGAGTAACGGAGACAAGTACGTACAGAGATCTACAT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 TATGTCTAAAATTTTGGAAGAATGGGAGTAACGGAGACAAGTACGTACAGAGATCTACAT 100
Query 61 TTACCGTCTTTGATCATCGGAGGATCATTCGCCGCCGTTGCCATTTGTCTCTCCCTTTTC 120
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 101 TTACCGTCTTTGATCATCGGAGGATCCTTCGCCACCGTTGCCATTTGTCTCTCCCTTTAC 160
Query 121 TCTATCCTCCAACATCTCCGTTTCTACACCAATCCTGCTGAACAAAAATGGATTGTTTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TCTATCCTCCAACATCTCCGTTTCTACACCAATCCTGCTGAACAAAAATGGATTGTTTCT 220
Query 181 GTTTTATTTATGGTGCCAGTTTATGCAACCGAATCGATCATTTCCTTGTCCAATTCGAAA 240
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 221 GTTTTGTTTATGGTGCCAGTTTATGCAACTGAATCGATCATTTCCTTGTCCAATTCGAAA 280
Query 241 TTCTCGCTACCCTGTGACATTTTGAGAAACTGCTATGAGGCTTTTGCTTTGTATTCCTTT 300
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 281 TTCTCGCTGCCTTGTGACATTTTGAGAAACTGCTATGAAGCTTTTGCTTTGTATTCGTTT 340
Query 301 GGAAGCTACTTGGTGGCGTGTCTAGGTGGTGAAAGAAGAGTTGTTGAATACCTCGAACAT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 341 GGAAGCTACTTGGTGGCATGTCTAGGTGGTGAAAGAAGAGTTGTTGAATACCTTGAAAAT 400
Query 361 GAATCAAAGAAACCATTGTTagaagaaggagcaaatgagagcaaaaagaagaagaagaag 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 401 GAATCAAAGAAACCATTGTTAGAAGAAGGAGCAAATGAGAGTAAAAAGAAGAAGAAGAAG 460
Query 421 agTTCATTTTGGAAATTCTTGTGTGATCCATATGTCTTGGGACGAGAGCTCTTTGTGATC 480
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AATTCATTTTGGAAATTCTTGTGTGATCCATATGTCTTGGGACGAGAGCTCTTTGTGATA 520
Query 481 GAGAAGTTTGGTCTCGTCCAGTATATGATCCTTAAAACCTTTTGTGCCTTCTTGACATTT 540
|| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 521 GAAAAGTTTGGTCTCGTTCAATATATGATCCTCAAAACCTTTTGTGCCTTCTTGACATTT 580
Query 541 CTGTTGGAGCTTCTTGGTGTCTATGGAGATGGTGAATTCAAATGGTATTACGGATACCCA 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 581 TTGTTGGAGCTTCTTGGTGTCTATGGTGATGGTGAATTCAAATGGTATTACGGATATCCA 640
Query 601 TACATAGTGGTGGTGCTAAACTTCAGCCAGATGTGGGCTCTGTTTTGCTTGGTTCAGTTC 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 641 TACATAGTGGTGGTGCTAAACTTCAGCCAAATGTGGGCTCTGTTTTGCTTGGTTCAGTTC 700
Query 661 TATAACGTGACTCATGAACGCCTTAAAGAAATAAAGCCGTTGGCTAAGTTCATTAGCTTT 720
||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 701 TATAATGTCACTCATGAACGGCTTAAAGAAATAAAACCGTTGGCTAAGTTCATTAGCTTT 760
Query 721 AAGGCTATCGTGTTTGCCACTTGGTGGCAAGGCTTCGGGATCGCGTTGCTTTGTTATTAC 780
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 761 AAGGCTATCGTGTTTGCGACTTGGTGGCAAGGCTTCGGTATCGCGTTGCTTTGTTATTAC 820
Query 781 GGTATACTTCCAAAAGAAGGAAGATTCCAGAACGGGTTGCAAGATTTTCTCATTTGCATT 840
|||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||
Sbjct 821 GGTATACTTCCAAAAGAAGGTCGATTCCAAAACGGGCTGCAAGATTTCCTCATTTGCATT 880
Query 841 GAGATGGCGATTGCAGCGGTGGCTCATCTTTTTGTTTTTCCAGCTGAACCTTACCACTAT 900
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 881 GAGATGGCGATTGCAGCGGTGGCTCATCTCTTTGTTTTTCCAGCTGAACCTTACCACTAC 940
Query 901 ATTCCGATATCAGTGTGTGGTAAAATCACAGCCGAAACAAGCAAGACGGAAGTGAAACTA 960
|||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 941 ATTCCGGTATCAGAGTGCGGTAAAATCACAGCCGAAACGAGCAAGACGGAAGTGAAACTA 1000
Query 961 GAAGAAGGTGGTCTTGTTGAGACAACGGAGACTCAGGTTGAAGCATCTGGCACAAGCATT 1020
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1001 GAAGAAGGTGGTCTTGTTGAGACCACGGAGACTCAGGTTGAAGCATCTGGCACAAGCATT 1060
Query 1021 AAGGAGAGTGTACAAGACATAGTTATTGATGGTGGCCAACACGTCGTGAAAGATGTGGTT 1080
|||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct 1061 AAGGAGAGTGTACAGGACATAGTGATTGACGGTGGCCAACATGTCGTGAAAGATGTAGTT 1120
Query 1081 CTTACTATAAACCAAGCAATGGGACCGGTGGAGAAGGGTGTGACGAAGATCCAGGATACG 1140
||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 1121 CTTACAATAAACCAAGCAATAGGACCGGTAGAGAAGGGTGTAACGAAGATCCAGGATACG 1180
Query 1141 ATTCATCAAAAGCTTTTGGATTCGGATGGTAAAGAAGAAACAGAAGTGACTGAAGAAGTG 1200
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1181 ATTCATCAAAAACTTTTGGATTCGGACGGTAAAGAAGAAACAGAAGTGACCGAAGAAGTG 1240
Query 1201 ACCGTTGAGACTTCGGTGCCGCCAAAAGAGTGATTTTTGAGATTTGCTCTTTGTT 1255
|||||||||||||||||||| ||||||||||||| |||| |||||| |||||||
Sbjct 1241 ACCGTTGAGACTTCGGTGCCCCCAAAAGAGTGATCGTTGAAATTTGCCCTTTGTT 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5