BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921343
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24190.1 | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 | chr1:... 235 3e-61
> AT1G24190.1 | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 | chr1:8563558-8570505
REVERSE LENGTH=4441
Length=4441
Score = 235 bits (127), Expect = 3e-61
Identities = 234/284 (82%), Gaps = 13/284 (5%)
Strand=Plus/Plus
Query 104 GGATGGACAACCTCCACTAAAGAAATGCAATGAG-TTCATGGACGCAATTGGTTTTGTTA 162
|||||||||||||||||| |||||| | |||| || | ||| || ||| | |||||||
Sbjct 406 GGATGGACAACCTCCACTGAAGAAACGTGTTGAGTTTGA-GGAAGCTATTAGCTTTGTTA 464
Query 163 ACAAGATTAATACTAGGTTTCAAGGCG--G-TCGT-TCATACAAATCATTTTTAGACATT 218
|||||||||| || |||||||| || | | |||| | ||||||||||||||||||||||
Sbjct 465 ACAAGATTAAGACAAGGTTTCAGGGAGATGATCGTGT-ATACAAATCATTTTTAGACATT 523
Query 219 TTAAACCTCTACAGAAAGGAGAGAAAGTCCATCAAAGAGGTCTACGATGAGGTTGCTATC 278
|||||| | ||||||| ||| || |||||||||| ||||||||| | |||||||| |||
Sbjct 524 TTAAACATGTACAGAAGGGATAGCAAGTCCATCACTGAGGTCTACCAGGAGGTTGCGATC 583
Query 279 TTGTTTCGGGATCATTCGGATTTGCTTGCGGAGTTTACTCACTTTTTGCCTGCTACTCCA 338
| |||||||||||||| ||| |||| | |||||||||||||||| | |||| |||| ||
Sbjct 584 CTATTTCGGGATCATTCAGATCTGCTCGTGGAGTTTACTCACTTTCTACCTGATACTTCA 643
Query 339 GCAACGGCCTCGT-TTC-ATTCTCTTAAACCT-CAAGTGCGTGA 379
||||||||||| | ||| || || ||||| || || || |||||
Sbjct 644 GCAACGGCCTC-TATTCCAT-CTGTTAAAACTTCA-GTTCGTGA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5