BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921344
Length=532
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24210.1 | Symbols: | Paired amphipathic helix (PAH2) super... 228 5e-59
> AT1G24210.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8573549-8575156 REVERSE LENGTH=801
Length=801
Score = 228 bits (123), Expect = 5e-59
Identities = 213/253 (84%), Gaps = 19/253 (8%)
Strand=Plus/Plus
Query 281 AGAGGATTTTATGAACAAGCTTAAGACAAGGTCTC-GTA-CTCTTGATACTCATGTAGTG 338
|||||||||||| |||||||| |||||| ||| || | | | ||||||||||||||||||
Sbjct 352 AGAGGATTTTATAAACAAGCTCAAGACACGGTTTCAG-AGC-CTTGATACTCATGTAGTG 409
Query 339 GGGTCATTTAAAGCGATAATGA-GAATGTTTAAAGAGGGAAAGATGTCGGTAAAAGAGGT 397
||| || || | | |||||| || |||||||||||||||||||||||||||| |||||
Sbjct 410 GGGGCAATTCGCGGGTTAATGAAGA-TGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGT 468
Query 398 GCACA-AGGAGGTCACTGATATTCTCTAT-TATCATGAAGATTTGATC-AACGACTTTCT 454
||| | ||||||||| |||| |||||| | ||||||||||||||||| || ||||||||
Sbjct 469 GCA-AGAGGAGGTCATTGATGTTCTCT-TCTATCATGAAGATTTGATTGAA-GACTTTCT 525
Query 455 CAGATTTTTCGA-AAAGAATGATCCTATAGCATCAGCATCACTACTACTAGAATTGTAAC 513
|||||||||| | |||||| ||| || || ||||||||||||||||| |||| ||||
Sbjct 526 CAGATTTTTC-ACAAAGAAC---CCTGTATCAACAGCATCACTACTACTACAATTATAAC 581
Query 514 GAG--ATGTATTT 524
||| ||||||||
Sbjct 582 GAGTGATGTATTT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25468712529
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5