BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921348

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11830.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   255    9e-68


> AT3G11830.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr3:3732661-3736374 FORWARD LENGTH=1965
Length=1965

 Score =  255 bits (138),  Expect = 9e-68
 Identities = 146/150 (97%), Gaps = 0/150 (0%)
 Strand=Plus/Plus

Query  24    ATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTAGAGGTGGAGCTATAGAT  83
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1262  ATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGTGGAGCTATAGAT  1321

Query  84    ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACTATTGCTTGGAAGTCACAGCTT  143
             |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct  1322  ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGGAAGTCACAGCTT  1381

Query  144   TTCATCAACTCTTATGCGAAGGCTCTGGAG  173
             |||||||||||||||||||||||||| |||
Sbjct  1382  TTCATCAACTCTTATGCGAAGGCTCTAGAG  1411



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9751943306


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5