BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921353
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23149.1 | Symbols: CPuORF29 | conserved peptide upstream op... 248 1e-65
AT1G23150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 248 1e-65
AT1G70782.1 | Symbols: CPuORF28 | conserved peptide upstream op... 191 2e-48
AT1G70780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 191 2e-48
> AT1G23149.1 | Symbols: CPuORF29 | conserved peptide upstream
open reading frame 29 | chr1:8206549-8207618 FORWARD LENGTH=982
Length=982
Score = 248 bits (134), Expect = 1e-65
Identities = 177/196 (90%), Gaps = 10/196 (5%)
Strand=Plus/Plus
Query 4 CTCCGGTGACG-TTTGTGAATGGTGGAAACTAATCCGATAGGTGATAATCTTAAGCTCAC 62
||| ||||||| ||||||||||||||||||||||| ||| |||||||||| || ||||||
Sbjct 147 CTCTGGTGACGTTTTGTGAATGGTGGAAACTAATCTGATTGGTGATAATCATAGGCTCAC 206
Query 63 CCTTTCAAC-AACAAGGGCGAGCTTT-TACATCATCCCTCTCTCTTC-AGACTCTGTTTT 119
||||||||| || ||||||||||||| | ||||||||||||||| || ||||||||||||
Sbjct 207 CCTTTCAACTAA-AAGGGCGAGCTTTCT-CATCATCCCTCTCTC-TCAAGACTCTGTTTT 263
Query 120 CGCTTTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTCGACCCGTGAAa 179
| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 264 CTCATTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTTGACCCGTGAAC 323
Query 180 tca-tca-tcatcatc 193
|| ||| ||||||||
Sbjct 324 -CAATCAATCATCATC 338
> AT1G23150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G70780.1);
Has 124 Blast hits to 124 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8206549-8207618
FORWARD LENGTH=982
Length=982
Score = 248 bits (134), Expect = 1e-65
Identities = 177/196 (90%), Gaps = 10/196 (5%)
Strand=Plus/Plus
Query 4 CTCCGGTGACG-TTTGTGAATGGTGGAAACTAATCCGATAGGTGATAATCTTAAGCTCAC 62
||| ||||||| ||||||||||||||||||||||| ||| |||||||||| || ||||||
Sbjct 147 CTCTGGTGACGTTTTGTGAATGGTGGAAACTAATCTGATTGGTGATAATCATAGGCTCAC 206
Query 63 CCTTTCAAC-AACAAGGGCGAGCTTT-TACATCATCCCTCTCTCTTC-AGACTCTGTTTT 119
||||||||| || ||||||||||||| | ||||||||||||||| || ||||||||||||
Sbjct 207 CCTTTCAACTAA-AAGGGCGAGCTTTCT-CATCATCCCTCTCTC-TCAAGACTCTGTTTT 263
Query 120 CGCTTTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTCGACCCGTGAAa 179
| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 264 CTCATTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTTGACCCGTGAAC 323
Query 180 tca-tca-tcatcatc 193
|| ||| ||||||||
Sbjct 324 -CAATCAATCATCATC 338
> AT1G70782.1 | Symbols: CPuORF28 | conserved peptide upstream
open reading frame 28 | chr1:26695166-26696392 REVERSE LENGTH=1136
Length=1136
Score = 191 bits (103), Expect = 2e-48
Identities = 156/180 (87%), Gaps = 10/180 (6%)
Strand=Plus/Plus
Query 4 CTCCG-GTG-A-CGTTTGTGAATGGTGGAAACTAATCCGATAGGTGATAA-TCTTAAGCT 59
||||| ||| | ||||||||||||||||||||||||||||| |||| ||| | ||| |||
Sbjct 127 CTCCGTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGT-TTACGCT 185
Query 60 CACCCTTTCAA-CAACAAGGGCGAGCTTTTACATCATCCCTCTCTCTTCAGACTCTGTTT 118
| ||||||| | ||| |||||||||||||| | || ||| |||||| || ||||||||
Sbjct 186 CTCCCTTTCCATCAA-AAGGGCGAGCTTTT-C-TCTTCC-TCTCTCGACATCCTCTGTTT 241
Query 119 TCGCTTTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTCGACCCGTGAA 178
|||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 242 TCGCTTTCGGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAA 301
> AT1G70780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male
gametophyte, pollen tube; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G23150.1); Has
143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695166-26696392
REVERSE LENGTH=1136
Length=1136
Score = 191 bits (103), Expect = 2e-48
Identities = 156/180 (87%), Gaps = 10/180 (6%)
Strand=Plus/Plus
Query 4 CTCCG-GTG-A-CGTTTGTGAATGGTGGAAACTAATCCGATAGGTGATAA-TCTTAAGCT 59
||||| ||| | ||||||||||||||||||||||||||||| |||| ||| | ||| |||
Sbjct 127 CTCCGTGTGAATCGTTTGTGAATGGTGGAAACTAATCCGATCGGTGGTAAGT-TTACGCT 185
Query 60 CACCCTTTCAA-CAACAAGGGCGAGCTTTTACATCATCCCTCTCTCTTCAGACTCTGTTT 118
| ||||||| | ||| |||||||||||||| | || ||| |||||| || ||||||||
Sbjct 186 CTCCCTTTCCATCAA-AAGGGCGAGCTTTT-C-TCTTCC-TCTCTCGACATCCTCTGTTT 241
Query 119 TCGCTTTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTCGACCCGTGAA 178
|||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 242 TCGCTTTCGGATCTTGCAAAGAAGGCTGGTACTTTCGCTGCCTTGGCCTCGACCCGTGAA 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8752435074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5