BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921354
Length=466
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23149.1 | Symbols: CPuORF29 | conserved peptide upstream op... 682 0.0
AT1G23150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 682 0.0
> AT1G23149.1 | Symbols: CPuORF29 | conserved peptide upstream
open reading frame 29 | chr1:8206549-8207618 FORWARD LENGTH=982
Length=982
Score = 682 bits (369), Expect = 0.0
Identities = 430/458 (94%), Gaps = 10/458 (2%)
Strand=Plus/Plus
Query 16 AAAAGATGTTGCTTTACAAGAAGAAGAATAATCAGATTGTTAAAGGAAACAGAATCTTGA 75
|||||||||||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct 395 AAAAGATGTTGCTTTACAAG-A-AA-AAGAATCAGATTGTTAAAGGAAACAGAATCTTGA 451
Query 76 TCAGCGTTACGTTTCTTGGTAGTGCTGGTCCGATCCGGTTCGTTGCTAATGAAAGTGATC 135
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 452 TCAGCGTAACGTTTCTTGGTAGTGCTGGTCCGATCCGGTTCGTTGCTAATGAAGGTGATC 511
Query 136 TTGTTGCAGCTGTGATTGATACTGCTTTGAAATGTTATGCTCGTGAAGGTCGTCTTCCGA 195
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 512 TTGTTGCATCTGTGATTGATACTGCTTTGAAATGTTATGCTCGTGAAGGTCGTCTTCCTA 571
Query 196 TTCTTGGTTCTGATTTCAACGATTTTGTCTTTTATTGTCCTATGGTTGGACCTGGAGCTT 255
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 572 TTCTTGGATCTGATTTCAACGATTTTGTTTTTTATTGTCCAATGGTTGGACCTGGAGCTT 631
Query 256 TGAGTCCATGGGAAGCAATTGGGTCGGTGGGAGTGAGGAACTTTATGTTGTGTAAGAA-A 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 632 TGAGTCCATGGGAAGCAATTGGGTCGGTGGGAGTGAGGAACTTTATGTTGTGTAAGAAGA 691
Query 315 --CCAGAGGAGAAGAAGGTGGAGGGAGACAATGGAAGATCGAATTTTCCGAATAATGGAG 372
||||||||||||||||| |||| ||| || ||||||||||||||||||| ||||||||
Sbjct 692 AACCAGAGGAGAAGAAGGTTGAGGAAGATAAGGGAAGATCGAATTTTCCGATTAATGGAG 751
Query 373 CTAGGAAAGGAGCTGGTGGAAGTTTTAAGGCTTGGATTAATAAATCTTTTAGTCTTAAAG 432
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 752 CTAGAAAAGGAGCTGGTGGAAGTTTTAAGGCTTGGATTAATAAATCTTTAAGACTTAAAG 811
Query 433 TGACTACCCATTAGAGACA-TA-T-ATGTGT-GTCTTC 466
||||||||||||||||| | || | || ||| ||||||
Sbjct 812 TGACTACCCATTAGAGAGACTACTTATATGTTGTCTTC 849
> AT1G23150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G70780.1);
Has 124 Blast hits to 124 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8206549-8207618
FORWARD LENGTH=982
Length=982
Score = 682 bits (369), Expect = 0.0
Identities = 430/458 (94%), Gaps = 10/458 (2%)
Strand=Plus/Plus
Query 16 AAAAGATGTTGCTTTACAAGAAGAAGAATAATCAGATTGTTAAAGGAAACAGAATCTTGA 75
|||||||||||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct 395 AAAAGATGTTGCTTTACAAG-A-AA-AAGAATCAGATTGTTAAAGGAAACAGAATCTTGA 451
Query 76 TCAGCGTTACGTTTCTTGGTAGTGCTGGTCCGATCCGGTTCGTTGCTAATGAAAGTGATC 135
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 452 TCAGCGTAACGTTTCTTGGTAGTGCTGGTCCGATCCGGTTCGTTGCTAATGAAGGTGATC 511
Query 136 TTGTTGCAGCTGTGATTGATACTGCTTTGAAATGTTATGCTCGTGAAGGTCGTCTTCCGA 195
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 512 TTGTTGCATCTGTGATTGATACTGCTTTGAAATGTTATGCTCGTGAAGGTCGTCTTCCTA 571
Query 196 TTCTTGGTTCTGATTTCAACGATTTTGTCTTTTATTGTCCTATGGTTGGACCTGGAGCTT 255
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 572 TTCTTGGATCTGATTTCAACGATTTTGTTTTTTATTGTCCAATGGTTGGACCTGGAGCTT 631
Query 256 TGAGTCCATGGGAAGCAATTGGGTCGGTGGGAGTGAGGAACTTTATGTTGTGTAAGAA-A 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 632 TGAGTCCATGGGAAGCAATTGGGTCGGTGGGAGTGAGGAACTTTATGTTGTGTAAGAAGA 691
Query 315 --CCAGAGGAGAAGAAGGTGGAGGGAGACAATGGAAGATCGAATTTTCCGAATAATGGAG 372
||||||||||||||||| |||| ||| || ||||||||||||||||||| ||||||||
Sbjct 692 AACCAGAGGAGAAGAAGGTTGAGGAAGATAAGGGAAGATCGAATTTTCCGATTAATGGAG 751
Query 373 CTAGGAAAGGAGCTGGTGGAAGTTTTAAGGCTTGGATTAATAAATCTTTTAGTCTTAAAG 432
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 752 CTAGAAAAGGAGCTGGTGGAAGTTTTAAGGCTTGGATTAATAAATCTTTAAGACTTAAAG 811
Query 433 TGACTACCCATTAGAGACA-TA-T-ATGTGT-GTCTTC 466
||||||||||||||||| | || | || ||| ||||||
Sbjct 812 TGACTACCCATTAGAGAGACTACTTATATGTTGTCTTC 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22153258827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5