BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921360
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23201.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 715 0.0
> AT1G23201.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK
(InterPro:IPR012891); BEST Arabidopsis thaliana protein match
is: GCK domain-containing protein (TAIR:AT5G02210.1); Has
106 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8230209-8230775
FORWARD LENGTH=567
Length=567
Score = 715 bits (387), Expect = 0.0
Identities = 504/561 (90%), Gaps = 6/561 (1%)
Strand=Plus/Plus
Query 30 ATGTCATCCACGGATCTCAAACCGGAATCTAAATCTGAAAATAACCAAGTCTCGTCGAAG 89
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60
Query 90 TCGAAGGCAGTGAAAGGTCCATTA-CATGTGTTCATGAAAAAAGGTGGTTGCGAAGAATC 148
||||| |||||| ||||| | || ||||||||||||||| |||||||||||||||||||
Sbjct 61 CCGAAGCCAGTGAGAGGTCGA-TATCATGTGTTCATGAAAGAAGGTGGTTGCGAAGAATC 119
Query 149 ATATACAGCTTGTGTAGGTTGTGATGCGCAGAAAGATGA-GTGTAGGGAAGCCTTTTCAA 207
|||||| |||| ||||||| |||||| |||||||||| | |||||||||||||| ||| |
Sbjct 120 ATATACCGCTTTTGTAGGTCGTGATGTGCAGAAAGAT-ACGTGTAGGGAAGCCTATTCGA 178
Query 208 TGCTTGAAAAGTGTATGAAAGCTCGCTCTGATTACTTTGAGCCATATCTCGCGTGGCAGA 267
|| | |||||||||||||| |||||||||||||||||||||| || |||||||| |||||
Sbjct 179 TGGTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAGCGATTTCTCGCGTTGCAGA 238
Query 268 ACGCTAGGGCTGAAGTGATGCTGAGAGAAATCGATGCCTTCCTCCATGCGAAACCAAAGG 327
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACGCTAGGGCTGAAGTGATGCAGAGAGAAATCGATGCCTTCCTCCATGCGAAACCAAAGG 298
Query 328 ATAGAGACGAGATGTTTACCAAGTTCATGATAAGAGGTGATTGCAAAGAAGCTTTTATGG 387
| |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 299 ACAGAGACGAGATGTTTACCAAGTTCATGACAAGAGGTGCTTGCAAAGAAGCATTTATGG 358
Query 388 CTTGGAATGACTTCTGCAAAGAAGCTAAGAAGAATAATAAAAGTTGTCTTCATACA-CCA 446
|||||| |||||||||||||||| ||| |||||| ||||||||||||| ||||| | ||
Sbjct 359 CTTGGATTGACTTCTGCAAAGAATCTAGGAAGAACAATAAAAGTTGTCGTCATA-ATCCT 417
Query 447 ACCATGGACACCTTGTTCAAGTGTATGAAGGCTCATTCTGATTACTATCACCCGCTTCTC 506
||||||||||| || |||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 418 GCCATGGACACCATGCTCAAGTGTGTGAAGGCTCACTCTGATTACTATCATCCGCTTCTC 477
Query 507 ACGGTATTCAAAAATGCTGAAGAACATTTTAAAAAAGAGATCAAAGCCTTGGATACGAGG 566
|||||||||||| || |||||||||| |||||| |||||| | |||||| ||| |||
Sbjct 478 ACGGTATTCAAAGCTGGTGAAGAACATCATAAAAAGGAGATCGACGCCTTGAATATGAGA 537
Query 567 GAGGGAGCTGAAGCTGATGCT 587
||| | ||||||||||||||
Sbjct 538 GAGCAAACTGAAGCTGATGCT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5