BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921378
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23260.1 | Symbols: MMZ1, UEV1A | MMS ZWEI homologue 1 | chr... 857 0.0
AT1G70660.1 | Symbols: MMZ2, UEV1B | MMS ZWEI homologue 2 | chr... 479 1e-134
> AT1G23260.1 | Symbols: MMZ1, UEV1A | MMS ZWEI homologue 1 | chr1:8256986-8258688
REVERSE LENGTH=815
Length=815
Score = 857 bits (464), Expect = 0.0
Identities = 499/516 (97%), Gaps = 2/516 (0%)
Strand=Plus/Plus
Query 4 TTCCTGAGATTCATCGGCGATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 TTCCTGAGATTCATCGGCGATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTT 156
Query 64 TAGATTGTTGGAAGAGCTTGAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTAAGCTA 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 157 TAGATTGTTGGAAGAGCTTGAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTTAGCTA 216
Query 124 TGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCC 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCC 276
Query 184 TCCAAATACTGCATACGAAGGGAAAATCTTCCAGCTGAAGCTGTTCTGTGGTAAGGAGTA 243
||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 277 TCCTAATACTGCATATGAAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGTAAGGAGTA 336
Query 244 CCCTGAAAGTCCACCAAGTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCC 303
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CCCTGAAAGTCCACCGACTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCC 396
Query 304 AGAATCTGGAGTGGTTGAACCGAGTCTCTTCCCTATGCTCACTAATTGGCGGCGCGAATA 363
|||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 397 AGAAACTGGAGTGGTTGAACCGAGTCTCTTCCCTATGCTCACTAACTGGCGGCGAGAATA 456
Query 364 CACAATGGAGGACATACTGGTTAAGCTGAAAAAAGAAATGATGACTTCACATAACCGGAA 423
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 457 TACAATGGAGGACATACTGGTTAAGCTGAAAAAAGAAATGATGACTTCGCATAACCGGAA 516
Query 424 GTTAGCTCAACCCCCTGAAGGTAACGAGGAAGCTAGGGTAGATCCAAAGGGACCAGCTAA 483
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 517 GTTAGCTCAACCCCCGGAAGGTAACGAGGAAGCTAGGGCAGATCCAAAAGGACCAGCTAA 576
Query 484 ATGTTGTGTGATGTGAAGAGAGCGGTTGGTGGGAAT 519
|||||||||||||||||||||| | |||||||||||
Sbjct 577 ATGTTGTGTGATGTGAAGAGAG-G-TTGGTGGGAAT 610
> AT1G70660.1 | Symbols: MMZ2, UEV1B | MMS ZWEI homologue 2 | chr1:26640595-26642149
FORWARD LENGTH=840
Length=840
Score = 479 bits (259), Expect = 1e-134
Identities = 418/493 (85%), Gaps = 17/493 (3%)
Strand=Plus/Plus
Query 23 ATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTTTAGATTGTTGGAAGAGCTT 82
||| ||||||| |||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct 161 ATGGGTTCGGAAGAAGAGAAGGTCGTTGTTCCCAGAAACTTTAGATTATTGGAAGAGCTA 220
Query 83 GAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTAAGCTATGGAATGGATGATGCTGAT 142
||||||||||||||||| ||||||||||| || || || |||||||||||||||||||||
Sbjct 221 GAAAGAGGTGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGAT 280
Query 143 GATATTTAT-ATGCAATCTTGGACTGGCACCATTCTTGGTCCTCCA-AATACTGCATACG 200
||||||| | ||||||||||||||||| |||||||||||||||| | |||||||| || |
Sbjct 281 GATATTT-TGATGCAATCTTGGACTGGTACCATTCTTGGTCCTC-ATAATACTGCGTATG 338
Query 201 AAGGGAAAATCTTCCAGCTGAAGCTGTTCTGTGGTAAGGAGTACCCTGAAAGTCCACCAA 260
||||||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct 339 AAGGGAAAATCTTTCAGCTGAAGCTATTCTGTGGAAAGGATTATCCGGAAAGTCCACCTA 398
Query 261 GTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCC--AGAATCTGGAGTGGT 318
||||||||| |||| || ||||||||||||||||| || || ||||| ||||||||
Sbjct 399 CTGTGAGGTTTCAGAGTCGTATAAACATGGCTTGTGTCAATCCTGAGAAT--GGAGTGGT 456
Query 319 TGAACCGAGTCTCTTCCCTATGCTCACTAATTGGCGGCGCGAATACACAATGGAGGA-CA 377
||| ||||||| |||||||||||| | || ||| | | |||| |||||||||||| |
Sbjct 457 TGATCCGAGTCACTTCCCTATGCTTTCCAACTGGAGAAGAGAATTCACAATGGAGGATC- 515
Query 378 TACTGGTTAAGCTGAAAAAAGAAATGATGACTTCACATAACCGGAAGTTAGCTCAACCCC 437
||||| || |||| ||||||||||||||| | || || ||||| |||||||||||||||
Sbjct 516 TACTGATTCAGCTTAAAAAAGAAATGATGTCATCGCAGAACCGCAAGTTAGCTCAACCCT 575
Query 438 CTG-AAGGTAACGAGGAAG-CTAGGGTAGATCCAAAGGGACCAGC--T-AAATGTTGTGT 492
|| ||||||| ||||||| | ||| ||| |||||||||| || | |||||||| ||
Sbjct 576 -TGGAAGGTAATGAGGAAGGC-AGGACAGACCCAAAGGGACTAGTGGTGAAATGTTGCGT 633
Query 493 GATGTGAAGAGAG 505
|||||||| ||||
Sbjct 634 GATGTGAAAAGAG 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5