BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921381
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23280.1 | Symbols: | MAK16 protein-related | chr1:8260865-... 1384 0.0
> AT1G23280.1 | Symbols: | MAK16 protein-related | chr1:8260865-8262772
REVERSE LENGTH=1034
Length=1034
Score = 1384 bits (749), Expect = 0.0
Identities = 879/940 (94%), Gaps = 16/940 (2%)
Strand=Plus/Plus
Query 1 TTCAAGCTTCACCGTGAAAGATGCAACACGATAAGGTTATATGGCAGGTCATCGGGCACA 60
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 103 TTCAAGCTTCACCGGGAAAGATGCAACACGATGAGGTTATATGGCAGGTCATTAGGCACA 162
Query 61 ATCACTGCAGTTACATGGCCAAATTCGAAACTGGAATCTTCTGCAGAAATCAATATAACG 120
| ||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||| |
Sbjct 163 AGCACTGTAGTTACATGGCCAAAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATG 222
Query 121 TAACCGGAATCTGTAAT-GAAAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATC 179
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TAACAGGAATCTGTAATCG-AAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATC 281
Query 180 CGAGACCATGATGGAGTGTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCA 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CGTGACCATGATGGAGTGTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCA 341
Query 240 AAGAACTTGTGGGAGAGAGTTAAGCTGCCTGTAAACTATGAGATGGCTCTTGAAATGATT 299
|| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 342 AATAAATTGTGGGAGAGAGTTAAGCTGCCTGTAAACTATGAGAAGGCTCTTGAAATGATT 401
Query 300 GACAAACACTTGTTGTACTGGCCCAAGTTGTTGCAGCATAAGGTTAAACGAAGACTGACT 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 402 GACAAACACTTGTTGTACTGGCCCAAGTTGTTGCAGCATAAGGTTAAACAAAGACTGACT 461
Query 360 AAAATGACTCATATGCGTATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAATA 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 462 AAAATGACTCAGATGCGTATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAGTA 521
Query 420 ATCCCTAGGCCTAGAAGGCAAATAAAGAGGGAGTTGAGAAGAGAGGATAAGGCTA-AAAT 478
|| ||| |||||| ||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 522 GTCACTACGCCTAGGAGGCAAATAAAGAGGGAGTCGAGAAGAGAGGAAAAGGCTATAAA- 580
Query 479 AGCAGCTCAGTTGGATAAGGCTATTGAAAACGAGTTGATGGAACGTTTGAAGACAGGCAT 538
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 581 AGCAGCTCAGTTGGATAAGGCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCAT 640
Query 539 TTACCCTACTGACATATACAATATCTCAGATC-GTGCGTTTAACAAAATTCTTAATAAAG 597
|||||||||||| ||||||||| | || || | ||| |||||||||| | ||| ||| ||
Sbjct 641 TTACCCTACTGAAATATACAATTTATCTGA-CAGTGTGTTTAACAAACTGCTTGATAGAG 699
Query 598 AAATCGAA-CTCAACCAAGAAGTTGAGGAAGAAGAGGAGGAGGAAGGAGTGGTTGAATAT 656
|||||||| | |||| | ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 700 AAATCGAAAC-CAACGACGAAGTTGAGAAAGAAGAGGAGGAGGAAGGAGTGATTGAATAT 758
Query 657 GTTGAAGGCGATGATGAACTCGAAGCAGAGGAAGAAGAAGAAGACATGGAAGACTTCTCT 716
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 759 GTTGAAGGCGATGATGAACTCGAAGCAGAGGAAGAAGAAGA---CATGGAAGACTTCTCT 815
Query 717 GGTCTTCCATCTAAGGAGTCTTACCTTGAAGGTGATGATCATGACTCGGATGACGAGGA- 775
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 816 GGTCTTCCATCTAAGGAGTCTTACCTTGAAGGTGATGATCATGACTCAGATGACGAGGAT 875
Query 776 GAACGATGATGCTGAAGAACAAGTTGTGATTCATAAAA-G--AAGAGCTTTTAAGAAGTC 832
|| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 876 GA-CGATGATGCTGAAGAACAAGTTGTGATTCATAAAAAGGGAAGAGCTTTAAAGAAGTC 934
Query 833 TGATGATAACGGAAAAGCAAAGAAGAAATCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGA 892
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 935 TGATGATAATGGAAAAGCAAAGAAGAAACCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGA 994
Query 893 TGGAGACACAAGAAGATCCCTGAAAAGCCTTAAACTTTGA 932
|| ||||||||||||||||||||||||||||||| |||||
Sbjct 995 TGCAGACACAAGAAGATCCCTGAAAAGCCTTAAAATTTGA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5