BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921402
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23480.1 | Symbols: ATCSLA03, CSLA03, ATCSLA3, CSLA3 | cellu... 2889 0.0
AT5G22740.1 | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellu... 351 1e-95
> AT1G23480.1 | Symbols: ATCSLA03, CSLA03, ATCSLA3, CSLA3 | cellulose
synthase-like A3 | chr1:8333020-8336385 FORWARD LENGTH=2015
Length=2015
Score = 2889 bits (1564), Expect = 0.0
Identities = 1715/1788 (96%), Gaps = 10/1788 (1%)
Strand=Plus/Plus
Query 65 AGGACACAAACTAAGATCTC-TAGTAGAAGAGAAGAAACATTTCCTCCATGTTTAAGTTT 123
||||||||||| |||||||| | ||||| || || |||| ||||||||||||||||||||
Sbjct 95 AGGACACAAACCAAGATCTCGT-GTAGAGGAAAAAAAACCTTTCCTCCATGTTTAAGTTT 153
Query 124 TGAGATTCTGG-AGAGTTTCAAGTCCTGTGGAGAAAAATGTCACCATTGATGAAGTTCTT 182
|||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 154 TGAGCTTCTGGTTG-GTTTCAAGTCCTGTGGAGAAAAATGTCACCATTTTTGAAGTTCTT 212
Query 183 TCTCTTTCTCTATGATTATCTTTCACCTTCCTCTTGGTTTCTGGTCCAAAGACACAACTT 242
||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||
Sbjct 213 TCTCTTTCTCTATGATTATCTTTCACCTTCCTCTTTCTTTCTGGTCCAAAGAAATACCTT 272
Query 243 AGCAGCATTATCAGATACTACAGATGATGTTGTGAGAAGTGGCATAATTGGAGAGATTAT 302
|| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 273 AGGAGCATCATTAGATACTACAGATGGGGTTGTGAGAAGTGGCATAATTGGAGAGATTAT 332
Query 303 ATACATTTGGAAGCAGACAAGAATCTTTGTCTTTATACCAATCTTGAAATGTTTAGTGAC 362
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 333 ATACATTTGGAAGCAGACAAGAATCTTTGTCTTTATACCAATCTTGAAATGCTTAGTGAC 392
Query 363 AATATGTTTGGTCATGTCCCTTTTGTTGTTCATAGAAAGAGTTTATATGAGCATAGTTGT 422
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 393 AATATGTTTGGTAATGTCCCTTTTGTTGTTCATAGAAAGAGTTTATATGAGCATAGTAGT 452
Query 423 AGTGTTTGTGAAATTACTTAGAAGAACACCTGAGAAAGTACACAAATGGGAAGCTATAAA 482
|||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct 453 AGTGTTTGTGAAATTACTTAGACGAACACCTGAGAAAGTACACAAGTGGGAACCTATAAA 512
Query 483 CGACGATGATCTTGAGCTGGCCAACACAAACTACCCAATGGTTCTCATTCAGATCCCAAT 542
||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 513 CGATGATGACCTTGAGCTTGCCAATACAAACTACCCAATGGTTCTCATTCAGATCCCAAT 572
Query 543 GTACAATGAAAAAGAGGTTTGTCAGTTGTCTATAGGAGCAGCATGTAGACTTTCTTGGCC 602
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 573 GTACAATGAAAAAGAGGTTTGTCAGTTATCTATAGGAGCAGCCTGTAGACTTTCTTGGCC 632
Query 603 ATTGGATCGAATGATAATTCAAGTTCTTGATGATTCCACAGATCCAGCTAGTAAGGAATT 662
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 633 ATTGGATCGAATGATAGTTCAAGTACTTGATGATTCCACAGATCCAGCTAGTAAGGAATT 692
Query 663 GGTGAATGCGGAATGCGATAAATGGGCGAGAAAAGGTATAAACATAATGTCAGAGATTCG 722
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 693 GGTGAATGCGGAATGTGATAAATGGGCGAGGAAAGGTATAAACATAATGTCAGAGATTAG 752
Query 723 AGACAACAGAATCGGATACAAAGCAGGAGCATTAAAGGCAGGAATGATGCACAACTATGT 782
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 AGACAACAGAATTGGATACAAAGCAGGAGCATTAAAGGCAGGAATGATGCACAACTATGT 812
Query 783 GAAACAATGCGAGTTTGTCGCCATTTTCGATGCTGATTTTCAGCCTGATCCTGACTTTCT 842
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GAAACAATGCGAATTCGTCGCCATTTTCGATGCTGATTTTCAGCCTGATCCTGACTTTCT 872
Query 843 TGAACGAACCATTCCTTTTCTTATTCACAACCATGAAATCTCTCTGGTCCAATGCCGTTG 902
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 873 TGAACGAACCATTCCTTTTCTTATTCACAACCATGAAATCTCTCTTGTTCAATGCCGTTG 932
Query 903 GAAGTTTGTGAATGCAAACGAGTGCTTAATGACAAGAATGCAAGAGATGTCACTAAACTA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GAAGTTTGTGAATGCAAACGAGTGCTTAATGACAAGAATGCAAGAGATGTCACTAAACTA 992
Query 963 CCATTTTGTGGCTGAGCAAGAATCTGGATCGTCAATCCATGCTTTCTTTGGATTCAATGG 1022
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 993 CCATTTTGTGGCTGAGCAAGAATCTGGATCTTCAATACATGCTTTCTTTGGATTCAATGG 1052
Query 1023 AACCGCGGGTGTTTGGAGAATCGCAGCTTTAAACGAAGCTGGGGGATGGAAAGATCGAAC 1082
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1053 AACCGCGGGTGTATGGAGAATCGCAGCTTTAAACGAAGCTGGAGGATGGAAAGATCGAAC 1112
Query 1083 AACTGTAGAAGACATGGATTTAGCTGTAAGAGCTTGTCTTCATGGTTGGAAATTTGTCTA 1142
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1113 AACCGTAGAAGATATGGATTTAGCAGTAAGAGCTTGTCTTCATGGTTGGAAATTTGTCTA 1172
Query 1143 TGTCCATGACGTCGAGGTGAAAAATGAATTGCCAAGTACATTCAAAGCATACCGGTTTCA 1202
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1173 TGTCCATGACGTCGAGGTGAAAAATGAATTGCCAAGTACATTCAAAGCATACAGGTTTCA 1232
Query 1203 GCAACATAGATGGTCTTGTGGACCAGCGAATCTATGGAGGAAGATGACAATGGAAATCTT 1262
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1233 GCAACATAGATGGTCTTGTGGACCAGCTAATCTATGGAGGAAGATGACAATGGAAATCTT 1292
Query 1263 ACAGAACAAGAAAGTGTCGGCGTGGAAGAAATTGTATCTCATATACAATTTCTTCTTCAT 1322
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1293 ACAGAACAAGAAAGTGTCGGCCTGGAAGAAATTGTATCTCATATACAATTTCTTCTTCAT 1352
Query 1323 AAGGAAGATTGTAGTACACATCTTCACATTTGTCTTCTACTGTCTGATTTTACCAGCAAC 1382
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1353 AAGGAAGATTGTAGTACACATCTTCACATTTGTCTTCTACTGTCTGATATTACCAACAAC 1412
Query 1383 TGTGCTATTCCCTGAGCTCCAAGTTCCTAAATGGGCAACTGTTTATTTTCCTACTACAAT 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 TGTGCTATTCCCTGAGCTCCAAGTTCCTAAATGGGCAACTGTTTATTTTCCTACTACAAT 1472
Query 1443 CACTATCCTTAACGCAATCGCAACACCTCGATCACTCCATCTTCTTGTCTTTTGGATCTT 1502
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1473 CACTATCCTTAACGCAATCGCTACACCTCGATCACTCCATCTTCTTGTCTTTTGGATCTT 1532
Query 1503 ATTCGAGAATGTAATGTCGATGCATCGCACAAAAGCGACTTTCATCGGTTTACTAGAGGC 1562
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1533 ATTCGAGAATGTAATGTCGATGCATCGCACAAAAGCGACATTCATCGGGTTACTAGAGGC 1592
Query 1563 AGGACGGGTTAACGAATGGGTTGTTACTGAAAAATTAGGTGACACCCTCAAGTCTAAGTT 1622
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1593 AGGACGGGTTAACGAATGGGTTGTTACTGAAAAATTAGGTGACACTCTCAAGTCTAAGTT 1652
Query 1623 AATAG------CTACAACTAAGCTTTATACAAGATTTGGACAAAGAATCAACTGGAGAGA 1676
||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1653 AATAGGTAAAGCTACAACTAAGCTTTATACCAGATTTGGACAAAGACTCAACTGGAGAGA 1712
Query 1677 ACTCGTTGTTGGATTATATATATTCTTCTGCGGATGCTACGATTTCGCATATGGAGGATC 1736
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1713 ACTCGTTGTTGGATTATATATATTCTTCTGCGGATGTTACGATTTCGCATATGGAGGATC 1772
Query 1737 ATACTTCTATGTTTATCTGTTTTTACAGTCTTGTGCATTTTTTGTTGCCGGAGTTGGTTA 1796
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1773 ATACTTTTATGTTTATCTGTTTTTACAGTCTTGTGCATTTTTTGTTGCTGGAGTTGGTTA 1832
Query 1797 TATTGGCACATTTGTTCCAACTGTTTAGACTAGACTTTTGTATTTGAG 1844
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1833 TATTGGCACATTTGTTCCAACTGTTTAGATTAGACTTTTGTATTTGAG 1880
> AT5G22740.1 | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellulose
synthase-like A02 | chr5:7554928-7560073 REVERSE LENGTH=2263
Length=2263
Score = 351 bits (190), Expect = 1e-95
Identities = 808/1097 (74%), Gaps = 80/1097 (7%)
Strand=Plus/Plus
Query 535 ATCCCAATGTACAATGAAAAAGAGGTTTGTCAGTTGTCTATAGGAGCAGCATGTAGACTT 594
||||| |||| ||| ||| |||||||| | || | || |||||||| || ||| |||||
Sbjct 514 ATCCCCATGTTCAACGAACGAGAGGTTTATAAGCTATCAATAGGAGCGGCGTGTGGACTT 573
Query 595 TCTTGGCCATTGGATCGAAT-GATAATTCAAGTTCTT-GATGATTCCACAGATCC-AGCT 651
|| ||||| | ||||| | | | ||||||| | || ||||| || |||||||| | ||
Sbjct 574 TCCTGGCCGTCCGATCGTCTCG-TGATTCAAG-TGTTAGATGACTCTACAGATCCTA-CT 630
Query 652 AG-TAAGGAATTGGT-GAATGCGGAATG-CGATAA-ATGGGCGAGAAAAGGTATAAACA- 706
| |||| || |||| ||| | ||| || | | || |||||| || ||||| || || |
Sbjct 631 -GTTAAGCAAATGGTGGAA-GTGGAGTGTC-A-AAGATGGGCAAGTAAAGGAATCAATAT 686
Query 707 TA-ATGTCAGAGATTCGAGACAACAGAATCGGATACAAAGCAGGAGCATTAAAGGCAGGA 765
|| | ||| | || |||| || ||| | || |||||||| || || ||||||| ||||
Sbjct 687 TAGGTATCA-A-ATAAGAGAGAATAGAGTTGGTTACAAAGCCGGTGCTTTAAAGGAAGGA 744
Query 766 ATGATGCACAACTATGTGAAACAATGCGAGTTTGTCGCCATTTTCGATGCTGATTTTCAG 825
| | | | ||||| || || ||||||| ||| | ||| ||||| || |||||||||
Sbjct 745 CTCAAACGTAGTTATGTCAAGCATTGCGAGTATGTTGTCATCTTCGACGCCGATTTTCAG 804
Query 826 CCTGATCCTGACTTTCTT-GAACGAACCATTCCTTTTCTTATTCACAA--CCATGA-AAT 881
|| || ||||| |||||| | || | ||||||||| || || ||||| ||| | | |
Sbjct 805 CCCGAACCTGATTTTCTTCG-CCGTAGCATTCCTTTCCTCATGCACAATCCCA--ACATT 861
Query 882 -CTCTCTGGTCCAATGC-CGTTGGAAGTTTGTGAATGCAAACGAGTGCTTAATGACAAGA 939
| || |||| | | || || ||| ||| || ||| | | ||||||||| |||| |||
Sbjct 862 GC-CT-TGGTTC-AGGCTCGATGGCGGTTCGTAAATTCTGATGAGTGCTTATTGACGAGA 918
Query 940 ATGCAAGAGATGTCACTAAACTACCATTT-TGTGGCTGAGCAAGAATCT-GGATCGTCAA 997
|||||||| |||||| | | |||||||| | | |||||||||| | || || ||||
Sbjct 919 ATGCAAGAAATGTCATTGGATTACCATTTCACT-GTTGAGCAAGAA-GTGGGTTCATCAA 976
Query 998 TC-CATGCTTTCTTT-GGATTCAATGGAACCGCGGGTGTTTGGAGAATCGCAGCTTTAAA 1055
| |||||||| ||| || ||||| |||||||| || | |||||||| || || ||||
Sbjct 977 -CACATGCTTT-TTTCGGCTTCAACGGAACCGCCGGAATATGGAGAATAGCGGCGATAAA 1034
Query 1056 CGAAGCTGG-GGGATGGAAAGATCGAACAACTGTAGAAGACATGGATTTAGCTGTAAGAG 1114
|||||||| ||| ||||||||||| || || || ||||| |||||| | || || |||
Sbjct 1035 TGAAGCTGGTGGG-TGGAAAGATCGGACCACCGTGGAAGATATGGATCTCGCCGTCCGAG 1093
Query 1115 CTTGTCTTCATGGTTGGAAATTTGTCTATGTCCATGA-CGTCGAGGTGAAAAATGA-ATT 1172
| |||||| || ||||||||| |||| || ||| | || ||||||||| ||| ||
Sbjct 1094 CAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTC-AGGTGAAAAGTGAGCTT 1152
Query 1173 GCCAAGTACATTCAAAGCATACCGGTTTCAGCAACATAGATGGTCTTGTGGACCAGCGAA 1232
|||||||| || | ||| | ||| ||||||||||||||||||||||||||||| || ||
Sbjct 1153 -CCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTTGTGGACCTGCAAA 1211
Query 1233 TCTATGGAGGAAGATGACAATGGAAATCTTACAGAA-CAAGAAAGTGTCGG--CGTGGAA 1289
||| | ||||| ||| ||||| ||| || |||| |||||||||| | | |||||
Sbjct 1212 TCTCTTTAGGAAAATGGTTATGGAGATCGTA-AGAAACAAGAAAGTGA-GATTC-TGGAA 1268
Query 1290 GAAATTGTATC-TCATATACAATTTCTTCTTCATAAGGAAGATTGTAGTACACATCT--- 1345
|||| |||| | | ||||||| |||||||| | ||||| || | | ||||| |
Sbjct 1269 GAAAGTGTA-CGTGATATACAGCTTCTTCTTTGTGAGGAAAATCATTG--CACAT-TGGG 1324
Query 1346 TCACATTT-GTCTTCTACTGTC-T-GATT-TTAC-C--AGCAACTGTGCTATTCCCTGAG 1398
|||||||| || |||||||| | | | || || | | | ||| | | || |||| |||
Sbjct 1325 TCACATTTTGT-TTCTACTG-CGTTG-TTCTTCCTCTCA-CAA-T-T-CTCGTCCCGGAG 1377
Query 1399 CTCCAAGTTCCTAAATGGGCAACTGTTTATTTTCC-TAC-TACAATCACTATCCTTAACG 1456
| ||||||| | |||| | |||||| | || | | | || |||||||||| ||
Sbjct 1378 GTTAAAGTTCCGATTTGGGGTTCGGTTTATATCCCATCCAT-CA-TCACTATCCTCAATT 1435
Query 1457 CAATCGCAACACCTCGATCACTCCATCTTCTTGT-CTTTTGGAT-CTTATTCGAGAATGT 1514
| ||| || || | ||| | ||||| || || || |||||| || ||||||||||||
Sbjct 1436 CCGTCGGTACTCCAAGGTCAATTCATCTGCT-GTTCTATTGGATTCT-ATTCGAGAATGT 1493
Query 1515 AATGTCGATGCATCGCACAAAAGCGACTTTCATCGGTTTACTAGAGGCAGGACGGGTTAA 1574
|||||| |||| || ||||| || ||| |||| ||| | | ||||||||| ||| |||
Sbjct 1494 GATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCTAA 1553
Query 1575 CGAATGGGTTGTTACTG 1591
||| ||||| || ||||
Sbjct 1554 CGAGTGGGTAGTGACTG 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5