BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921411
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23570.2 | Symbols: | Domain of unknown function (DUF220) |... 817 0.0
AT1G23600.1 | Symbols: | Domain of unknown function DUF220 | c... 436 1e-121
AT1G23590.1 | Symbols: | Domain of unknown function DUF220 | c... 429 2e-119
AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | c... 283 2e-75
> AT1G23570.2 | Symbols: | Domain of unknown function (DUF220)
| chr1:8354806-8356364 REVERSE LENGTH=1067
Length=1067
Score = 817 bits (442), Expect = 0.0
Identities = 515/550 (94%), Gaps = 6/550 (1%)
Strand=Plus/Plus
Query 377 GGAAAACAAATCGAGAAAGGTTCTGATGGAGGATGGACCAAGGCAGATCGCGAAGGTGAA 436
||||| |||||| ||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 237 GGAAAGCAAATCAAGAAAGGTTTTAATGGAGGATGGACCGAGGCAGATCGCGAAGGTGAA 296
Query 437 GAAAACCGTGGACTGGAAATTCCTTGGGTCGTCTTTTGCTGTCCCCATAAGTGTAATTGT 496
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 GAAAACCGTGGACTGGAAATTCCTTGGGTCGTCTTTTGCTGTCCCCATAAGTCTAATTGT 356
Query 497 CGATGAAAACAGAAAAGATCTTACTGCAAAATATAAGAAAAAGAAAATGATCTTAATGAA 556
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 357 CGATGAAAACAGAAAAGATCTTACAGCAAAATATAAGAAAAAGAAAATGATCTTGATGAA 416
Query 557 AGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTATGTAGATTCAGAACGCTTGTGCAA 616
||| ||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 417 AGTTTTCGAAGGTAGCTATAGAGTGGAGCCACTATATGTAGATTCAGAACGCTTGTGCAA 476
Query 617 GAACATGGAGCCGAAGAGTCCGGAAGACTACAAAAGATGTAGCGGCGGACAAGGAAGGAT 676
|||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 477 TAACATGGAGCCGAAGAGTCCGGCAGAATACAAAAGATGTAGCGGTGGACAAGGAAGGAT 536
Query 677 TGCATCAAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGCATCAAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC 596
Query 737 ACTATCTTGGTACATTCGTGAGGTCACCATCAAGAACACCAAAACTGCGCTCAAAACACT 796
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 ACTATCTTGGTACATTCGAAAGGTCACCATCAAGAACACCAAAACTGCGCTGAAAACACT 656
Query 797 TCAAACTTGGGGTATAACCCTTCGAAA-CCGAGGTGAAGTGACTTCAACAGACAAAGATG 855
||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||| |||
Sbjct 657 TCAAACTTGGGGTATAAACCTTCGAAATCC-AGGTGCAGTGACTTCAACAGACAAATATG 715
Query 856 GAAACGTAACAAAATCACGAAGaaaaaaaTTAACCAATAA-AAAC-T-GAAAACACTAGG 912
|||||||||||| ||||| |||||||||| || || || |||| | ||||||||||||
Sbjct 716 GAAACGTAACAATATCACCAAGAAAAAAAAGAAA-AACAACAAACATTGAAAACACTAGG 774
Query 913 CTAAATGAAT 922
||||||||||
Sbjct 775 CTAAATGAAT 784
Score = 342 bits (185), Expect = 3e-93
Identities = 221/238 (93%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 21 ATGGTATTTACAGGATTTGGTGGCTGGGTCAATCAGAACAATGAACAGCCTCGTAAGGCC 80
||||||||||| ||||||||||||||||||| ||| |||||| |||||||||| ||||||
Sbjct 1 ATGGTATTTACTGGATTTGGTGGCTGGGTCAGTCAAAACAATAAACAGCCTCGAAAGGCC 60
Query 81 AAGCCCAAAATAACTGAAAATGTTGAATCTAAGTCAGAGTCAGAAATGG---ATACTAAT 137
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 61 AAGCCCAAAAAAACTGAAAATGTTGAATCTAAGTCAGAGTCAGAAATGGTGGATAATAAT 120
Query 138 GATGACTATGATAAGATGAAGAAATATTATGACGAAGAAGAGATGAAGAAACAAGATCAA 197
|| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 121 AATAACCATGATAAGATGAAGAAATATTATGACGAAGATGAGAGGAAGAAACAAGATCAA 180
Query 198 CTTTGGATAGATGCAGAGAAGAAGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGG 255
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTGGATAGATGCAGAGAAGATGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGG 238
> AT1G23600.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8361004-8362485 REVERSE LENGTH=1134
Length=1134
Score = 436 bits (236), Expect = 1e-121
Identities = 630/810 (78%), Gaps = 68/810 (8%)
Strand=Plus/Plus
Query 20 AATGGTATTTACAGGATTTGGTGGCTGGGTCAATCAGAACAATGAACAGCCTCGTAAGGC 79
||| || ||| | ||||||||||||||| |||||||||||||| ||||||| | ||||
Sbjct 131 AAT-GTGTTTCCTGGATTTGGTGGCTGGATCAATCAGAACAATCAACAGCCCCCAAAGGG 189
Query 80 CAAGCCCAAAATAACTGAAAATGTTGAATCTAAGTCAGAGT-CAGAAATGGATACTAATG 138
| || |||| | | |||| || ||| ||||||| || || | | || ||||||||||||
Sbjct 190 CGAGTCCAAGAGATCTGAGAACGTTAAATCTAACTC-GAATACGGATATGGATACTAATA 248
Query 139 ATGACTATGATAAGATGAAGAAATATTATGACGAAGAAGAGATGAAGAAAC-AAGATCAA 197
|| || | ||||| | || | || ||||| ||| ||| || ||
Sbjct 249 AT-AC--CG--AAGAT---G-------AT---G-AG--GAGATTAAGCAACTAA-AT--- 283
Query 198 CTTTGGA-TAGATGCAGAGAAGAAGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGGT 256
||||||| | |||||||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 284 CTTTGGAGT-GATGCAGAGAAGAAGCATCCATGGTATGATCCCCCTCCAAAAGTGAAGGT 342
Query 257 GACAACAAAAAATGGTCTTTGCCATATGAACATAGAATTGACACTGGGATTTCCTCCAGA 316
||||| ||||| |||||||||||||||||||||||||||||| | ||| | ||||| ||
Sbjct 343 GACAATGAAAAAGGGTCTTTGCCATATGAACATAGAATTGACATTAGGAGTGCCTCCTGA 402
Query 317 TAAAGTCTT-CGGATTTTTTACTGA-TCCATCTAACGGACCATT-TTT-TC-T---C--- 365
| || | | || | |||| | | | |||| | ||| |||||| ||| | | |
Sbjct 403 TGGAG-CATACGAACTTTTCA-TCAATCCAACCAACATACCATTCTTTGTTATAGACAAG 460
Query 366 TCCC--C-AC--CT-CTGGAAAACAAATCGAGAAAGGTTCTGATGGAGGATGGACCAAGG 419
|| | || || |||| ||||||||| |||||| || ||| | | |||||||| |||
Sbjct 461 TCAGGGCGACAACTTCTGGCAAACAAATCAAGAAAGATTTTGAAGAAAGATGGACCTAGG 520
Query 420 CAGATCGCGAAGGTGAAGAAAACCGTGG-ACTGGAAATTCCTTGGGT-CGTCTTT-TGCT 476
|||| || ||||||||||||| | |||| | ||| | |||||| ||| | ||| | ||
Sbjct 521 CAGACCGTGAAGGTGAAGAAAGCTGTGGCA-TGGGACTTCCTTTGGTTC-TCTGGAT-CT 577
Query 477 GTCCCCAT-AAGTGTAATTGTCGATGAAAACAGAAAAGATCTT-ACTGCAAAATATAAGA 534
||||||| || | |||||||| | ||||||| |||||| ||| | | |||||||||||
Sbjct 578 CTCCCCATTAATT-TAATTGTCAACGAAAACAAAAAAGACCTTGAA-GTAAAATATAAGA 635
Query 535 AA-AAGAAAATGATCTTAATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTAT 593
|| || |||||||| || |||||||||||||| ||||||| ||| | || ||| | |||
Sbjct 636 AAGAA-AAAATGATGTTCATGAAAGTGTTCGAAGGTAGCTGGAAAATAGAACCACTATAT 694
Query 594 GTAGATTCAGAACGCTTGTGCAAGAACATGGAGCCGAAGAGTCCG-GAAGACTACAAAAG 652
|||||| |||| ||||| |||||||||||| | || ||||||| | ||||| |||||||
Sbjct 695 GTAGATGCAGATCGCTTATGCAAGAACATGAAACCTAAGAGTC-GAGAAGAATACAAAAA 753
Query 653 ATGTAGCGGCGGACAAGGAAGGATTGCATCAAAGGTGACAATGAACCAATACTTTAAGCC 712
|||||| ||||||||||||| |||||| |||| ||||| ||| ||||||| ||| ||||
Sbjct 754 ATGTAGTGGCGGACAAGGAAAAATTGCACCAAAAGTGACTATGGACCAATATTTTCAGCC 813
Query 713 ATATCCTCCTTTTAA-TCTGCCGCCACTATCTTGGTACATTCGTGAGGTCACCATCAAGA 771
|||||||| |||||| ||||||||| | |||||||| |||||| | ||||||||||||
Sbjct 814 ATATCCTC-TTTTAAATCTGCCGCCGTTTTCTTGGTATATTCGTAACATCACCATCAAGA 872
Query 772 ACACCAAAACTGC-GCTCAAAACACTTCAA 800
|||||||||| | |||||||| ||||||
Sbjct 873 CCACCAAAACT-CTGCTCAAAATGCTTCAA 901
> AT1G23590.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8359125-8360645 REVERSE LENGTH=1093
Length=1093
Score = 429 bits (232), Expect = 2e-119
Identities = 505/631 (80%), Gaps = 41/631 (6%)
Strand=Plus/Plus
Query 196 AACTTTGGATAGATGCAGAGAAGAAGCATCCATGGAATGATGCCCCTCC-AAAGGTGAAG 254
||||||||| ||||||||||||||| |||||||| ||||||||||||| ||| || |||
Sbjct 234 AACTTTGGAGAGATGCAGAGAAGAAATATCCATGGTATGATGCCCCTCCTAAA-GTCAAG 292
Query 255 GTGACAACAAAAAATGGTCTTTGCCATATGAACATAGAATTGACACTGGGATTTCCTCCA 314
|||||||||||||| ||||||||||||||| |||||||||||||| | ||||| ||||||
Sbjct 293 GTGACAACAAAAAAGGGTCTTTGCCATATGTACATAGAATTGACATTTGGATTGCCTCCA 352
Query 315 -GATAAAGTCTTCGGA-TTTTTTACTGATCCA-TCTAACGGACCA-T--T--TTTTC--- 363
||| ||||||| || |||| ||| ||||| | ||| |||| | | | |
Sbjct 353 CGAT-CAGTCTTC-GAGCTTTTCACTAATCCAGAC-AACTTACCACTCGTCAGTGACAAG 409
Query 364 TC-T--C-CCCACCTCTGGAAAACAAATCGAGAAAGGTTCTGATGGA-GGATGGACCAAG 418
|| | | || || ||||| ||||||| || |||||| ||| || ||||||||||||
Sbjct 410 TCTTGGCGCCAACTTCTGGTAAACAAAAAAAGGAAGGTTTTGA-AGAGGGATGGACCAAG 468
Query 419 GCAGATCGCGAAGGTGAAGA-AAA-CCGTGGACTGGAAATTCCTTG-GGTCGTCTTTTGC 475
|||||| | | |||| ||| ||| |||| |||| | |||| || ||| |||| |
Sbjct 469 GCAGATAGTGGAGGT--AGATAAAGTTGTGGCCTGGGATTTCC-TGTGGTGGTCTGGAGG 525
Query 476 TGTCCCCATAAGTGTAATTGTC-GATGAAAACAGA-AAAGATCTTACTGCAAAATATAAG 533
| | || |||| | ||| || | | |||||| || |||||||||| | ||||||||||
Sbjct 526 TATGCCGATAAATATAAATG-CGGTTGAAAA-TGAGAAAGATCTTAGGGGAAAATATAAG 583
Query 534 AAAAAGAAAATGATCTTAATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTAT 593
||| ||||||||| || |||||||||||||||||||||||||||||||||||| | |||
Sbjct 584 AAACAGAAAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTAT 643
Query 594 GTAGATT-CAGAACGCTTGTGCAAGAACATGGAGCCGAAGAGTCCGGAAGACTACAAAAG 652
||||||| | || ||||||||||| | | |||||| |||||||| ||||| |||||||
Sbjct 644 GTAGATTTC-GAGCGCTTGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAA 702
Query 653 ATGTAGCGGCGGACAAGGAAGGATTGCATCAAAGGTGACAATGAACCAA-TACTTTAAGC 711
||||||||| || ||||||| |||||||||||| ||||||||| ||||| || ||| |||
Sbjct 703 ATGTAGCGGTGGGCAAGGAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGC 762
Query 712 CATATCCTCCTTTTAATCTGCCGCCACTATCTTGGTACATTCGTGAGGTC-ACCATCAAG 770
|||||||| ||||||| ||||||| | ||||||||||||||| ||| | |||||||||
Sbjct 763 CATATCCTATTTTTAATTTGCCGCCG-T-TCTTGGTACATTCGT-AGGACCACCATCAAG 819
Query 771 AACACCAAAACTGC-GCTCAAAACACTTCAA 800
| ||||| ||| | |||||||| ||||||
Sbjct 820 ACCACCACGACT-CTGCTCAAAATGCTTCAA 849
> AT1G23660.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8371609-8372845 REVERSE LENGTH=868
Length=868
Score = 283 bits (153), Expect = 2e-75
Identities = 499/657 (76%), Gaps = 59/657 (9%)
Strand=Plus/Plus
Query 159 AAATATTATGACGAAGAAG-AGATGAAGAAACAA-GATCAACTTTGGATAGATGCAGA-G 215
|||||||| ||| ||| | || ||| || | || || || |||||| || |||||| |
Sbjct 182 AAATATTACGACTTAGATGAAG-TGAGGAGAGAAGGA-GAAATTTGGAGAGCTGCAGAGG 239
Query 216 AAGAAGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGGTGACAACAAAAAATGGTCTT 275
|| |||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 240 AA-AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAATGGTCTT 298
Query 276 TGCCATATGAACATAGAATTGACACTGGGATTTCCTCCAGATAA-AGTCTTCG-GATTTT 333
|||||||||||||||||||| | ||||||||| ||||| || | ||||| || ||| ||
Sbjct 299 TGCCATATGAACATAGAATTTAAACTGGGATTACCTCCTGA-AGGAGTCTACGAGATGTT 357
Query 334 TTACTGATCCAT-CTAACGGA-CCATTTTTTCT-------CT---CC---C-C-ACC-TC 375
||| ||||| | ||| | ||| | || | | || | | | | ||
Sbjct 358 C-ACTAATCCAAAC-AACT-ATCCAGTCTT-CAAAAAGGACAAGGCCGGGCGCCAACGTC 413
Query 376 TGGAAAACAAATCGAGAAAGGTTCTGATGGAGGATGGACCAAGGCAGATCGCGAAGGTGA 435
||||||||||||| ||||| ||| ||| | | ||||||| ||||||| | || || ||
Sbjct 414 TGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGGAGATGG 473
Query 436 AGAAAACCGTGG-ACTGGAAATTCCTTGGGTCGTCTTTTG--CTGTCCCCATA-AGTGTA 491
| |||| | | ||||||| |||||| || | | | | |||| ||| | | ||
Sbjct 474 A-AAAAGATTTGTACTGGAACTTCCTTT--TCATATCCAGAGCAATCCCGATACA-TCTA 529
Query 492 ATTGTCGATGAAAA-CAGAAAAGATCTTACTGCAAAATATAAGAAAAAGAAAATGATCTT 550
|| |||||||||| || || | |||| || |||||||||| || |||||| ||||| ||
Sbjct 530 GTTATCGATGAAAATCATAAGA-ATCTCACAGCAAAATATAGGACAAAGAATATGATGTT 588
Query 551 AATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTATGTAGATTCAG-AACGCT 609
|||||||||| |||||||||| ||||||| ||||| | ||||||| ||| ||||||
Sbjct 589 TTTGAAAGTGTTGGAGGGTAGCTGGAAAGTGGTGCCAGACTTTGTAGAT-CAGGAACGCT 647
Query 610 TGTGCAAGAACATGGA-GCCGAAGAGTCCG-GAAGACTACAAAAGATGTAGCGGCGGACA 667
|||||||| || || |||||| |||| | ||||| |||||||||||||| || |||||
Sbjct 648 TGTGCAAGT-CAAGGTTGCCGAAAAGTC-GAGAAGAATACAAAAGATGTAGTGGTGGACA 705
Query 668 AGGAA-GGATTGCATCAAAGGTGACAATGAACCA-ATACTTTAAGCCATATCCTCCTT-T 724
||||| || ||| || |||||||| ||| | || || ||||||||| | ||||| || |
Sbjct 706 AGGAAAGG-TTGGGTCCAAGGTGACCATGGAGCAGAT-CTTTAAGCCTTCTCCTC-TTCT 762
Query 725 TAATCTGCCGCCACTATCTTGG-TACATTCGTGAGG-TCACCATCAAGAAC-ACCAA 778
||||||||| || | |||||| || || |||| || | |||||||| ||| |||||
Sbjct 763 TAATCTGCCACCGGTTTCTTGGATA-ATCCGTG-GGATTACCATCAA-AACCACCAA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5