BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921413
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23590.1 | Symbols: | Domain of unknown function DUF220 | c... 1022 0.0
AT1G23580.1 | Symbols: | Domain of unknown function DUF220 | c... 436 1e-121
AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | c... 381 5e-105
AT1G23620.1 | Symbols: | pseudogene, hypothetical protein | ch... 254 1e-66
AT1G23520.1 | Symbols: | Domain of unknown function (DUF220) |... 231 5e-60
> AT1G23590.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8359125-8360645 REVERSE LENGTH=1093
Length=1093
Score = 1022 bits (553), Expect = 0.0
Identities = 667/721 (93%), Gaps = 11/721 (2%)
Strand=Plus/Plus
Query 2 ATCTAAGTCAGTGTCAAATATGAATTCTAATAATGTCGACGATGAGGAGATGGAGGAAGG 61
|||||||||||||||| | |||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 172 ATCTAAGTCAGTGTCAGAGATGAATACTAATAATGTCGACGATGAGGTGATGGAGCAAGG 231
Query 62 AAAACTTTGGAGAGATGCAGAGAAGAAGCATCCATGGTTTGATGCCCCTCCTAAAGTGAA 121
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 232 AAAACTTTGGAGAGATGCAGAGAAGAAATATCCATGGTATGATGCCCCTCCTAAAGTCAA 291
Query 122 GGTGACAACAAAAAAGGGTCTTTGCCATATGTACGTAAAAATGACATTTGGATTGCCTCC 181
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 292 GGTGACAACAAAAAAGGGTCTTTGCCATATGTACATAGAATTGACATTTGGATTGCCTCC 351
Query 182 AAGATCAGT-TTATGAGCTTTTCACTAATCCAAACAACTTACCACTCTTCAGTGACAAGT 240
| ||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 352 ACGATCAGTCTT-CGAGCTTTTCACTAATCCAGACAACTTACCACTCGTCAGTGACAAGT 410
Query 241 CTTGGCGCCAACTTCTGGTAAACAAAAGAAGAAAGGTTTTGAAGAGGGATGGGCCGAGGC 300
||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||
Sbjct 411 CTTGGCGCCAACTTCTGGTAAACAAAAAAAGGAAGGTTTTGAAGAGGGATGGACCAAGGC 470
Query 301 AGATAGTGGAGGTAGAGAAGGTTGTGGCCTGGGATTTCCTGTGGTGGTCTGGAGGTATGC 360
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGATAGTGGAGGTAGATAAAGTTGTGGCCTGGGATTTCCTGTGGTGGTCTGGAGGTATGC 530
Query 361 CTATAAATCTAATTGCCGATGAAAATGAGAAAGATCTTACAGGAAAATATAAGAAACAAA 420
| |||||| ||| ||| | |||||||||||||||||||| ||||||||||||||||| |
Sbjct 531 CGATAAATATAAATGCGGTTGAAAATGAGAAAGATCTTAGGGGAAAATATAAGAAACAGA 590
Query 421 AAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATT 650
Query 481 CCGAAAGCTTGTGCAAGAACAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTG 540
||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 651 TCGAGCGCTTGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGCG 710
Query 541 GTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAA-TACTTTCAGCCATATCCT 599
|||| ||||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct 711 GTGGGCAAGGAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCCATATCCT 770
Query 600 CTTTTTAATTTGCCGCC---C-----ACATTCGTAGGACCACCATCAAGACCACCACGAC 651
|||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 771 ATTTTTAATTTGCCGCCGTTCTTGGTACATTCGTAGGACCACCATCAAGACCACCACGAC 830
Query 652 TCTCCTCAAAATGCTTCAAGATATTGGTGCCAAGATGCGAGTAGACCCGTACGAAAGTTC 711
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 831 TCTGCTCAAAATGCTTCAAGATATGGGTGCCAAGATGCGAGTAGACCCGTACGAAAGTTC 890
Query 712 T 712
|
Sbjct 891 T 891
> AT1G23580.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8357446-8358805 REVERSE LENGTH=1002
Length=1002
Score = 436 bits (236), Expect = 1e-121
Identities = 481/594 (81%), Gaps = 37/594 (6%)
Strand=Plus/Plus
Query 34 ATGTCGACGATGAG-GAGATGGAGG-AAGGA-AAACTTTGGAGAGATGCAGAGAAGAAGC 90
||| ||| |||||| | || |||| || || |||||||||| || ||||||||||||||
Sbjct 242 ATGACGAAGATGAGTGGGA--GAGGCAA-GATAAACTTTGGACAGCTGCAGAGAAGAAGC 298
Query 91 ATCCATGGTTTGATGCCCCTCCTAAAGTGAAGGTGACAACAAAAAAGGGTCTTTGCCATA 150
|||||||| |||||||||||||| || ||||||||||||||||||||| | |||||||
Sbjct 299 ATCCATGGAAAGATGCCCCTCCTAAGGTTAAGGTGACAACAAAAAAGGGTATATGCCATA 358
Query 151 TGTACGTAAAAATGACATTTGGATTGCCTCCAAGAT-CAGT-TTATGAGCTTTTCACTAA 208
|| || || || ||||||| || |||||||| ||| ||| || || |||||||||||
Sbjct 359 TGCACATAGAATTGACATTGGGGTTGCCTCC-TGATGGAGTCTT-CGAACTTTTCACTAA 416
Query 209 TCCAAACAACTTACCACTCTTCAGTGACAAGTCTTGGCGCCAACTTCTGGTAAA-CAAAA 267
|||| | ||| |||| | || | | | || |||||| | ||| ||||
Sbjct 417 TCCACATAACGGACCA------A---AC-A--C--CGAACC-ACTTCT-GAAAAGCAAAT 460
Query 268 GAAGAAAGGTTTTGAA-GAGGGATGGGCCGAGGCAGATAGTGGAGGTAG-AGAAGGTTGT 325
||||||||||||||| || ||||| ||||||||||| | | |||| | |||| | |||
Sbjct 461 CAAGAAAGGTTTTGAAGGA-CGATGGACCGAGGCAGATCGCGAAGGT-GAAGAAAGCTGT 518
Query 326 GGCCTGGGATTTCCTGT-GGTGGTCTGGAGGTATGCCTATAAATCTAATTGCCGATGAAA 384
||||||| | || | || || ||||| | ||| || |||| |||||||| ||||||||
Sbjct 519 GGCCTGGAACTT-CAGTGGGAGGTCTATTGCTATCCCCATAAGTCTAATTGTCGATGAAA 577
Query 385 ATGAGAA-AGATCTTACAG-GAAAATATAAGAAACAAAAAATGAAGTTCATGAAAGTGTT 442
| |||| ||||||||||| | |||||||| ||| | ||||||| |||||||||||| ||
Sbjct 578 A-CAGAAGAGATCTTACAGCG-AAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATT 635
Query 443 CGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTCCGAAAGCTTGTGCAAGAACAA 502
|||||||||||||||||||||||| | || |||||||| | | |||| |||||||||||
Sbjct 636 CGAGGGTAGCTATAAAGTGGAGCCTGTATACGTAGATTCAGTACGCTTATGCAAGAACAA 695
Query 503 GGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGCATC 562
| |||| |||||| ||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 696 GAAGCCGAAGAGTGTAGATGAATACAAGAAATGTAGTGGCGGACAAGGAAAGATTGCATC 755
Query 563 GAAAGTGACAATGGACCAATACTTTCAGCCATATCCTCTTTTTAATTTGCCGCC 616
||||||||||||||||||||| |||||||||||||||| ||||||| | |||||
Sbjct 756 GAAAGTGACAATGGACCAATATTTTCAGCCATATCCTCCTTTTAATCTACCGCC 809
> AT1G23690.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8377262-8378769 REVERSE LENGTH=1128
Length=1128
Score = 381 bits (206), Expect = 5e-105
Identities = 450/566 (80%), Gaps = 24/566 (4%)
Strand=Plus/Plus
Query 58 AAGGAAAACTTTGGAGAGATGCAGAGAAGAAGCATCCATGGTTTGATGCCCCTCCTAAAG 117
|||||||||||||||||| ||||||||||||| | ||||||| |||||| |||||||| |
Sbjct 299 AAGGAAAACTTTGGAGAGCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTCCTAAGG 358
Query 118 TGAAGGTGACAACAAAAAAGGGTCTTTGCCATATGTACGTAAAAATGACATTTGGATTGC 177
| ||||||||||||||||||||||||||||| ||| || || | ||||| | |||||||
Sbjct 359 TCAAGGTGACAACAAAAAAGGGTCTTTGCCACATGCACATAGAGTTGACAGTAGGATTGC 418
Query 178 CTCCAAG-ATCAGTTTATGAGCTT-TTCACTAATCCAAACAACTTACCACTCTTCA-G-T 233
|||| | | || ||||| || ||| ||||||| ||| |||| ||| |||||| | |
Sbjct 419 CTCC-GGAAGGGGTCTATGA-TTTGTTCGCTAATCCGAACGACTTTCCATTCTTCAGGAT 476
Query 234 -GAC-A--AGTCTTGGCGCCAACTTCTGGTAAACAAAAGAAGAAAGGTTTTGAAGAGGGA 289
||| | || || ||||| ||||| ||| ||||||| |||||||||||||| || ||
Sbjct 477 CGACAACGAGACTGGGCGCGAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAAGA 536
Query 290 TGGGCCGAGGCAGATAGTG-GAGG-TAGAGAAGGTTGTGGCCTGGGA-TTTCCTGTGGTG 346
||| ||||||||| || | | || | ||||| | | || ||||||| || || |||||
Sbjct 537 TGGACCGAGGCAG--AGCGCGCGGTTGGAGAAAGCTCTGACCTGGGACGTT-CTTTGGTG 593
Query 347 GTCTGGAGGTATGCCTA-TAAATCTAATTGCCGATGAAAATGAGAAAGATC-TTACAGGA 404
|| ||||| | | || | | | |||||||| |||||||| | ||| | | ||| ||||
Sbjct 594 GTGTGGAGCTTTTCC-ATTTACTCTAATTGTTGATGAAAACCA-AAAAAACTTTAGAGGA 651
Query 405 AAATATAAGAAACAAAAAATGAAGTTCATGAAAGT-GTTCGAGGGTAGCTATAAAGTGGA 463
| ||||| |||| | ||||||||||| |||||| | || ||||||| | ||| | ||
Sbjct 652 AGATATATGAAAGAGAAAATGAAGTTTATGAAA-TATTTTGAGGGTAAATGGAAAATAGA 710
Query 464 GCCAATTTATGTAGATTCCGAAAGCTTGTGCAAGAACAAG-GAGCCAAAGAGTCCAGAAG 522
|||| | || |||||||| ||| ||||||||||| || || |||| ||||||| |||||
Sbjct 711 GCCACTATACGTAGATTCAGAACGCTTGTGCAAGGAC-AGAAAGCCGAAGAGTCGAGAAG 769
Query 523 AATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAAT 582
||||||||| |||||| || ||| |||||||| |||||||||||||||||||||||||||
Sbjct 770 AATACAAAAGATGTAGCGGCGGAGAAGGAAAGGTTGCATCGAAAGTGACAATGGACCAAT 829
Query 583 ACTTTCAGCCATATCCTCTTTTTAAT 608
|||| || || ||| |||| |||||
Sbjct 830 ACTTCCAACCTTATTTTCTTCTTAAT 855
> AT1G23620.1 | Symbols: | pseudogene, hypothetical protein |
chr1:8364662-8366449 REVERSE LENGTH=1788
Length=1788
Score = 254 bits (137), Expect = 1e-66
Identities = 186/210 (89%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 399 ACAGG-AAAATATAAGAAACAAAAAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAA 457
||||| ||||||||| ||| | ||||||| |||||||||||| ||||| |||| ||||||
Sbjct 1390 ACAGGCAAAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAACTATAA 1449
Query 458 AGTGGAGCCAATTTATGTAGATTCCGAAAGCTTGTGCAAGAACAAGGAGCCAAAGAGTCC 517
|||||||||| | ||||||||||| | | |||||||||| || |||||||||||||||
Sbjct 1450 AGTGGAGCCACTATATGTAGATTCAGTACGCTTGTGCAATAATAAGGAGCCAAAGAGTTT 1509
Query 518 AGAAGAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGA 577
|||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 1510 TCAAGAATACAAAACATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGA 1569
Query 578 CCAATACTTTCAGCCATATCCTCTTTTTAA 607
||||||||||||||||||||||| ||||||
Sbjct 1570 CCAATACTTTCAGCCATATCCTCCTTTTAA 1599
> AT1G23520.1 | Symbols: | Domain of unknown function (DUF220)
| chr1:8343424-8344839 REVERSE LENGTH=1103
Length=1103
Score = 231 bits (125), Expect = 5e-60
Identities = 446/595 (75%), Gaps = 45/595 (8%)
Strand=Plus/Plus
Query 43 ATGAGGA-GATGGAGGAAGGAAAACTTTGGAGAGATGCAGAGAAG-AAGCATCCATGGTT 100
|||| || || |||| || ||||||||||||| ||||||||||| ||| | | ||||
Sbjct 286 ATGA-GATGAAGGAGCAACTAAAACTTTGGAGACATGCAGAGAAGAAAG-AACAATGGGA 343
Query 101 TGATGCCCCTCCTAAAGTGAAGGT-GACAACAAAAAAGGGTCTTTGCCATATGTACGTAA 159
|||| |||| |||| |||||||| || |||| || | |||||||||||| || || |
Sbjct 344 AGATGTCCCTGCTAAGGTGAAGGTGGA-AACAGAAGATGGTCTTTGCCATGTGGACATGG 402
Query 160 AAATGACATTTGGATTGCCT-C-CAAGATCAGTTTATGAGC-TTTTCACTAAT-CC-A-A 213
| | ||||| ||||||||| | |||| ||| || || | |||| |||||| || | |
Sbjct 403 TATTTACATTAGGATTGCCTCCTCAAG--CAGCCTACGA-CGTTTTGACTAATCCCGACA 459
Query 214 A-CAA-CTTAC-CACTCTTCAGTGA-CAAGTCTTGGCGCCAACTTCTGGTA-AACAAAAG 268
| ||| | ||| || | | | | ||| | | | | ||||||||| | ||| |
Sbjct 460 ACCAATCATACTCAAGAATAATTAACCAA--C--GCCACGAACTTCTGG-ATAACGTATC 514
Query 269 AAGAAAGGTTTTGA-AGAGGGATGGGCCGAGGCAGATAGTGGAGGTAGAGAAGGTTGTGG 327
|||||| || |||| || |||| |||| |||| ||||||| |||||| | |||||
Sbjct 515 AAGAAATGTGTTGACGGA-TAATGGATCGAGCCAGACGGTGGAGGCAGAGAAAGCTGTGG 573
Query 328 CCTGGGA-TTTCCTGTGGTGGTCTGGAGGTATGCCTATAAATCTA-ATTGCCGAT-GAAA 384
||||| | ||| || | ||||| ||| ||| || |||| |||| ||| || | ||||
Sbjct 574 CCTGGAAGTTT-CTTTCATGGTCGGGAACTATCCCGATAAGTCTAGATT-TCG-TCGAAA 630
Query 385 ATGAGAAAG-ATCTTACAGGAAAATATAAGAAACA-AAAAATGAAGTTCATG-AAAGTGT 441
| | ||| ||||| | | | ||||| |||| | ||||||| ||||||| ||||| |
Sbjct 631 A-CCGTAAGAATCTTTCTGCAGTATATATGAAA-AGGAAAATGATGTTCATGAAAAGT-T 687
Query 442 TCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTCCGAAA-GCTTGTGCAAG-AA 499
| |||||||| | |||||||||||||| || ||||||| | ||| | ||||||||| ||
Sbjct 688 TTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTAGATT-CAAAACGTTTGTGCAAGCAA 746
Query 500 CAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGC 559
| | ||||||| |||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 747 -ATGAAGCCAAAAAGTCGAGAAGAATACCATAAATGTAGTGGTGGACAAGGAAAGATTGC 805
Query 560 ATCGAAAGTGACAATGGACCAATAC-TTTCAGCCATATCCTCTTTTTAATTTGCC 613
||||| |||| |||| |||| || |||||||| | | || ||||||| ||||
Sbjct 806 GTCGAAGGTGAAAATGAACCAG-ACCTTTCAGCCTTCTTTTCCTTTTAATCTGCC 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34711795577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5