BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921413 Length=716 Score E Sequences producing significant alignments: (Bits) Value AT1G23590.1 | Symbols: | Domain of unknown function DUF220 | c... 1022 0.0 AT1G23580.1 | Symbols: | Domain of unknown function DUF220 | c... 436 1e-121 AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | c... 381 5e-105 AT1G23620.1 | Symbols: | pseudogene, hypothetical protein | ch... 254 1e-66 AT1G23520.1 | Symbols: | Domain of unknown function (DUF220) |... 231 5e-60 > AT1G23590.1 | Symbols: | Domain of unknown function DUF220 | chr1:8359125-8360645 REVERSE LENGTH=1093 Length=1093 Score = 1022 bits (553), Expect = 0.0 Identities = 667/721 (93%), Gaps = 11/721 (2%) Strand=Plus/Plus Query 2 ATCTAAGTCAGTGTCAAATATGAATTCTAATAATGTCGACGATGAGGAGATGGAGGAAGG 61 |||||||||||||||| | |||||| ||||||||||||||||||||| ||||||| |||| Sbjct 172 ATCTAAGTCAGTGTCAGAGATGAATACTAATAATGTCGACGATGAGGTGATGGAGCAAGG 231 Query 62 AAAACTTTGGAGAGATGCAGAGAAGAAGCATCCATGGTTTGATGCCCCTCCTAAAGTGAA 121 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || Sbjct 232 AAAACTTTGGAGAGATGCAGAGAAGAAATATCCATGGTATGATGCCCCTCCTAAAGTCAA 291 Query 122 GGTGACAACAAAAAAGGGTCTTTGCCATATGTACGTAAAAATGACATTTGGATTGCCTCC 181 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 292 GGTGACAACAAAAAAGGGTCTTTGCCATATGTACATAGAATTGACATTTGGATTGCCTCC 351 Query 182 AAGATCAGT-TTATGAGCTTTTCACTAATCCAAACAACTTACCACTCTTCAGTGACAAGT 240 | ||||||| || |||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 352 ACGATCAGTCTT-CGAGCTTTTCACTAATCCAGACAACTTACCACTCGTCAGTGACAAGT 410 Query 241 CTTGGCGCCAACTTCTGGTAAACAAAAGAAGAAAGGTTTTGAAGAGGGATGGGCCGAGGC 300 ||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |||| Sbjct 411 CTTGGCGCCAACTTCTGGTAAACAAAAAAAGGAAGGTTTTGAAGAGGGATGGACCAAGGC 470 Query 301 AGATAGTGGAGGTAGAGAAGGTTGTGGCCTGGGATTTCCTGTGGTGGTCTGGAGGTATGC 360 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 471 AGATAGTGGAGGTAGATAAAGTTGTGGCCTGGGATTTCCTGTGGTGGTCTGGAGGTATGC 530 Query 361 CTATAAATCTAATTGCCGATGAAAATGAGAAAGATCTTACAGGAAAATATAAGAAACAAA 420 | |||||| ||| ||| | |||||||||||||||||||| ||||||||||||||||| | Sbjct 531 CGATAAATATAAATGCGGTTGAAAATGAGAAAGATCTTAGGGGAAAATATAAGAAACAGA 590 Query 421 AAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 AAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATT 650 Query 481 CCGAAAGCTTGTGCAAGAACAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTG 540 ||| |||||||||| | |||||||||||||||||||||||||||||||||||||| | Sbjct 651 TCGAGCGCTTGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGCG 710 Query 541 GTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAA-TACTTTCAGCCATATCCT 599 |||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||| Sbjct 711 GTGGGCAAGGAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCCATATCCT 770 Query 600 CTTTTTAATTTGCCGCC---C-----ACATTCGTAGGACCACCATCAAGACCACCACGAC 651 |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 771 ATTTTTAATTTGCCGCCGTTCTTGGTACATTCGTAGGACCACCATCAAGACCACCACGAC 830 Query 652 TCTCCTCAAAATGCTTCAAGATATTGGTGCCAAGATGCGAGTAGACCCGTACGAAAGTTC 711 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 831 TCTGCTCAAAATGCTTCAAGATATGGGTGCCAAGATGCGAGTAGACCCGTACGAAAGTTC 890 Query 712 T 712 | Sbjct 891 T 891 > AT1G23580.1 | Symbols: | Domain of unknown function DUF220 | chr1:8357446-8358805 REVERSE LENGTH=1002 Length=1002 Score = 436 bits (236), Expect = 1e-121 Identities = 481/594 (81%), Gaps = 37/594 (6%) Strand=Plus/Plus Query 34 ATGTCGACGATGAG-GAGATGGAGG-AAGGA-AAACTTTGGAGAGATGCAGAGAAGAAGC 90 ||| ||| |||||| | || |||| || || |||||||||| || |||||||||||||| Sbjct 242 ATGACGAAGATGAGTGGGA--GAGGCAA-GATAAACTTTGGACAGCTGCAGAGAAGAAGC 298 Query 91 ATCCATGGTTTGATGCCCCTCCTAAAGTGAAGGTGACAACAAAAAAGGGTCTTTGCCATA 150 |||||||| |||||||||||||| || ||||||||||||||||||||| | ||||||| Sbjct 299 ATCCATGGAAAGATGCCCCTCCTAAGGTTAAGGTGACAACAAAAAAGGGTATATGCCATA 358 Query 151 TGTACGTAAAAATGACATTTGGATTGCCTCCAAGAT-CAGT-TTATGAGCTTTTCACTAA 208 || || || || ||||||| || |||||||| ||| ||| || || ||||||||||| Sbjct 359 TGCACATAGAATTGACATTGGGGTTGCCTCC-TGATGGAGTCTT-CGAACTTTTCACTAA 416 Query 209 TCCAAACAACTTACCACTCTTCAGTGACAAGTCTTGGCGCCAACTTCTGGTAAA-CAAAA 267 |||| | ||| |||| | || | | | || |||||| | ||| |||| Sbjct 417 TCCACATAACGGACCA------A---AC-A--C--CGAACC-ACTTCT-GAAAAGCAAAT 460 Query 268 GAAGAAAGGTTTTGAA-GAGGGATGGGCCGAGGCAGATAGTGGAGGTAG-AGAAGGTTGT 325 ||||||||||||||| || ||||| ||||||||||| | | |||| | |||| | ||| Sbjct 461 CAAGAAAGGTTTTGAAGGA-CGATGGACCGAGGCAGATCGCGAAGGT-GAAGAAAGCTGT 518 Query 326 GGCCTGGGATTTCCTGT-GGTGGTCTGGAGGTATGCCTATAAATCTAATTGCCGATGAAA 384 ||||||| | || | || || ||||| | ||| || |||| |||||||| |||||||| Sbjct 519 GGCCTGGAACTT-CAGTGGGAGGTCTATTGCTATCCCCATAAGTCTAATTGTCGATGAAA 577 Query 385 ATGAGAA-AGATCTTACAG-GAAAATATAAGAAACAAAAAATGAAGTTCATGAAAGTGTT 442 | |||| ||||||||||| | |||||||| ||| | ||||||| |||||||||||| || Sbjct 578 A-CAGAAGAGATCTTACAGCG-AAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATT 635 Query 443 CGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTCCGAAAGCTTGTGCAAGAACAA 502 |||||||||||||||||||||||| | || |||||||| | | |||| ||||||||||| Sbjct 636 CGAGGGTAGCTATAAAGTGGAGCCTGTATACGTAGATTCAGTACGCTTATGCAAGAACAA 695 Query 503 GGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGCATC 562 | |||| |||||| ||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 696 GAAGCCGAAGAGTGTAGATGAATACAAGAAATGTAGTGGCGGACAAGGAAAGATTGCATC 755 Query 563 GAAAGTGACAATGGACCAATACTTTCAGCCATATCCTCTTTTTAATTTGCCGCC 616 ||||||||||||||||||||| |||||||||||||||| ||||||| | ||||| Sbjct 756 GAAAGTGACAATGGACCAATATTTTCAGCCATATCCTCCTTTTAATCTACCGCC 809 > AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | chr1:8377262-8378769 REVERSE LENGTH=1128 Length=1128 Score = 381 bits (206), Expect = 5e-105 Identities = 450/566 (80%), Gaps = 24/566 (4%) Strand=Plus/Plus Query 58 AAGGAAAACTTTGGAGAGATGCAGAGAAGAAGCATCCATGGTTTGATGCCCCTCCTAAAG 117 |||||||||||||||||| ||||||||||||| | ||||||| |||||| |||||||| | Sbjct 299 AAGGAAAACTTTGGAGAGCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTCCTAAGG 358 Query 118 TGAAGGTGACAACAAAAAAGGGTCTTTGCCATATGTACGTAAAAATGACATTTGGATTGC 177 | ||||||||||||||||||||||||||||| ||| || || | ||||| | ||||||| Sbjct 359 TCAAGGTGACAACAAAAAAGGGTCTTTGCCACATGCACATAGAGTTGACAGTAGGATTGC 418 Query 178 CTCCAAG-ATCAGTTTATGAGCTT-TTCACTAATCCAAACAACTTACCACTCTTCA-G-T 233 |||| | | || ||||| || ||| ||||||| ||| |||| ||| |||||| | | Sbjct 419 CTCC-GGAAGGGGTCTATGA-TTTGTTCGCTAATCCGAACGACTTTCCATTCTTCAGGAT 476 Query 234 -GAC-A--AGTCTTGGCGCCAACTTCTGGTAAACAAAAGAAGAAAGGTTTTGAAGAGGGA 289 ||| | || || ||||| ||||| ||| ||||||| |||||||||||||| || || Sbjct 477 CGACAACGAGACTGGGCGCGAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAAGA 536 Query 290 TGGGCCGAGGCAGATAGTG-GAGG-TAGAGAAGGTTGTGGCCTGGGA-TTTCCTGTGGTG 346 ||| ||||||||| || | | || | ||||| | | || ||||||| || || ||||| Sbjct 537 TGGACCGAGGCAG--AGCGCGCGGTTGGAGAAAGCTCTGACCTGGGACGTT-CTTTGGTG 593 Query 347 GTCTGGAGGTATGCCTA-TAAATCTAATTGCCGATGAAAATGAGAAAGATC-TTACAGGA 404 || ||||| | | || | | | |||||||| |||||||| | ||| | | ||| |||| Sbjct 594 GTGTGGAGCTTTTCC-ATTTACTCTAATTGTTGATGAAAACCA-AAAAAACTTTAGAGGA 651 Query 405 AAATATAAGAAACAAAAAATGAAGTTCATGAAAGT-GTTCGAGGGTAGCTATAAAGTGGA 463 | ||||| |||| | ||||||||||| |||||| | || ||||||| | ||| | || Sbjct 652 AGATATATGAAAGAGAAAATGAAGTTTATGAAA-TATTTTGAGGGTAAATGGAAAATAGA 710 Query 464 GCCAATTTATGTAGATTCCGAAAGCTTGTGCAAGAACAAG-GAGCCAAAGAGTCCAGAAG 522 |||| | || |||||||| ||| ||||||||||| || || |||| ||||||| ||||| Sbjct 711 GCCACTATACGTAGATTCAGAACGCTTGTGCAAGGAC-AGAAAGCCGAAGAGTCGAGAAG 769 Query 523 AATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAAT 582 ||||||||| |||||| || ||| |||||||| ||||||||||||||||||||||||||| Sbjct 770 AATACAAAAGATGTAGCGGCGGAGAAGGAAAGGTTGCATCGAAAGTGACAATGGACCAAT 829 Query 583 ACTTTCAGCCATATCCTCTTTTTAAT 608 |||| || || ||| |||| ||||| Sbjct 830 ACTTCCAACCTTATTTTCTTCTTAAT 855 > AT1G23620.1 | Symbols: | pseudogene, hypothetical protein | chr1:8364662-8366449 REVERSE LENGTH=1788 Length=1788 Score = 254 bits (137), Expect = 1e-66 Identities = 186/210 (89%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 399 ACAGG-AAAATATAAGAAACAAAAAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAA 457 ||||| ||||||||| ||| | ||||||| |||||||||||| ||||| |||| |||||| Sbjct 1390 ACAGGCAAAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAACTATAA 1449 Query 458 AGTGGAGCCAATTTATGTAGATTCCGAAAGCTTGTGCAAGAACAAGGAGCCAAAGAGTCC 517 |||||||||| | ||||||||||| | | |||||||||| || ||||||||||||||| Sbjct 1450 AGTGGAGCCACTATATGTAGATTCAGTACGCTTGTGCAATAATAAGGAGCCAAAGAGTTT 1509 Query 518 AGAAGAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGA 577 |||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||||| Sbjct 1510 TCAAGAATACAAAACATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGA 1569 Query 578 CCAATACTTTCAGCCATATCCTCTTTTTAA 607 ||||||||||||||||||||||| |||||| Sbjct 1570 CCAATACTTTCAGCCATATCCTCCTTTTAA 1599 > AT1G23520.1 | Symbols: | Domain of unknown function (DUF220) | chr1:8343424-8344839 REVERSE LENGTH=1103 Length=1103 Score = 231 bits (125), Expect = 5e-60 Identities = 446/595 (75%), Gaps = 45/595 (8%) Strand=Plus/Plus Query 43 ATGAGGA-GATGGAGGAAGGAAAACTTTGGAGAGATGCAGAGAAG-AAGCATCCATGGTT 100 |||| || || |||| || ||||||||||||| ||||||||||| ||| | | |||| Sbjct 286 ATGA-GATGAAGGAGCAACTAAAACTTTGGAGACATGCAGAGAAGAAAG-AACAATGGGA 343 Query 101 TGATGCCCCTCCTAAAGTGAAGGT-GACAACAAAAAAGGGTCTTTGCCATATGTACGTAA 159 |||| |||| |||| |||||||| || |||| || | |||||||||||| || || | Sbjct 344 AGATGTCCCTGCTAAGGTGAAGGTGGA-AACAGAAGATGGTCTTTGCCATGTGGACATGG 402 Query 160 AAATGACATTTGGATTGCCT-C-CAAGATCAGTTTATGAGC-TTTTCACTAAT-CC-A-A 213 | | ||||| ||||||||| | |||| ||| || || | |||| |||||| || | | Sbjct 403 TATTTACATTAGGATTGCCTCCTCAAG--CAGCCTACGA-CGTTTTGACTAATCCCGACA 459 Query 214 A-CAA-CTTAC-CACTCTTCAGTGA-CAAGTCTTGGCGCCAACTTCTGGTA-AACAAAAG 268 | ||| | ||| || | | | | ||| | | | | ||||||||| | ||| | Sbjct 460 ACCAATCATACTCAAGAATAATTAACCAA--C--GCCACGAACTTCTGG-ATAACGTATC 514 Query 269 AAGAAAGGTTTTGA-AGAGGGATGGGCCGAGGCAGATAGTGGAGGTAGAGAAGGTTGTGG 327 |||||| || |||| || |||| |||| |||| ||||||| |||||| | ||||| Sbjct 515 AAGAAATGTGTTGACGGA-TAATGGATCGAGCCAGACGGTGGAGGCAGAGAAAGCTGTGG 573 Query 328 CCTGGGA-TTTCCTGTGGTGGTCTGGAGGTATGCCTATAAATCTA-ATTGCCGAT-GAAA 384 ||||| | ||| || | ||||| ||| ||| || |||| |||| ||| || | |||| Sbjct 574 CCTGGAAGTTT-CTTTCATGGTCGGGAACTATCCCGATAAGTCTAGATT-TCG-TCGAAA 630 Query 385 ATGAGAAAG-ATCTTACAGGAAAATATAAGAAACA-AAAAATGAAGTTCATG-AAAGTGT 441 | | ||| ||||| | | | ||||| |||| | ||||||| ||||||| ||||| | Sbjct 631 A-CCGTAAGAATCTTTCTGCAGTATATATGAAA-AGGAAAATGATGTTCATGAAAAGT-T 687 Query 442 TCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTCCGAAA-GCTTGTGCAAG-AA 499 | |||||||| | |||||||||||||| || ||||||| | ||| | ||||||||| || Sbjct 688 TTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTAGATT-CAAAACGTTTGTGCAAGCAA 746 Query 500 CAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGC 559 | | ||||||| |||| |||||||||| | ||||||||||||||||||||||||||||| Sbjct 747 -ATGAAGCCAAAAAGTCGAGAAGAATACCATAAATGTAGTGGTGGACAAGGAAAGATTGC 805 Query 560 ATCGAAAGTGACAATGGACCAATAC-TTTCAGCCATATCCTCTTTTTAATTTGCC 613 ||||| |||| |||| |||| || |||||||| | | || ||||||| |||| Sbjct 806 GTCGAAGGTGAAAATGAACCAG-ACCTTTCAGCCTTCTTTTCCTTTTAATCTGCC 859 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34711795577 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5