BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921414

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23610.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   422    1e-117
  AT1G23660.1 | Symbols:  | Domain of unknown function DUF220 | c...   219    2e-56 


> AT1G23610.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G23640.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr1:8362864-8363675 REVERSE LENGTH=667
Length=667

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 272/293 (93%), Gaps = 4/293 (1%)
 Strand=Plus/Plus

Query  9    ATGAAAAAGAAAATGAAGTGCATGAAAGTATTCGAGGGTAGTTGGAAAGTGGAGCCACTA  68
            |||||| |||||||||||| ||||||||| || |||||||| |||||||| |||||||||
Sbjct  305  ATGAAAGAGAAAATGAAGTTCATGAAAGTGTTTGAGGGTAGCTGGAAAGTCGAGCCACTA  364

Query  69   TACGTAGATCAGGAGCGCTTTTGCAAGTCTAGATCGGTGAATAGTCAAGAAGAGTACAAA  128
            |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  365  TACGTAGATCAGGAACGCTTTTGCAGGTCTAGGTCGGTGAATAGTCAAGAAGAGTACAAA  424

Query  129  AAATGTAGCGGCGGACGAGGAAGAATTGCATCAAAGGTGACAATGGAGCTTATCTTCCAG  188
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||  ||
Sbjct  425  AAATGTAGCGGCGGACGAGGAAGAATTGCATCGATGGTGACAATGGAGCTTATCTTTTAG  484

Query  189  CCTTCTTCTCTTCTTAATCTGCCACCGGTTTCTTGGATTATCCGTGGTATATATCACCAT  248
            |||||| | ||||||||||||||||||||||||||||| ||||||||     ||||||||
Sbjct  485  CCTTCTACCCTTCTTAATCTGCCACCGGTTTCTTGGATCATCCGTGG----GATCACCAT  540

Query  249  CAAAATCACCAAAATGTTGCTAGAAGATCTTAGAAAATATGTTATCATGATCC  301
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  CAAAATCACCAAAATGTTGCTAGAAGATCTTAGAAAATATGTTATCATGATCC  593


> AT1G23660.1 | Symbols:  | Domain of unknown function DUF220 | 
chr1:8371609-8372845 REVERSE LENGTH=868
Length=868

 Score =  219 bits (118),  Expect = 2e-56
 Identities = 234/289 (81%), Gaps = 12/289 (4%)
 Strand=Plus/Plus

Query  1    CAAAATATATGAAAAAGAAAATGAAGTGCATGAAAGTATTCGAGGGTAGTTGGAAAGTGG  60
            ||||||||| || |||||| |||| ||   ||||||| || |||||||| ||||||||||
Sbjct  561  CAAAATATAGGACAAAGAATATGATGTTTTTGAAAGTGTTGGAGGGTAGCTGGAAAGTGG  620

Query  61   AGCC--ACTATACGTAGATCAGGAGCGCTTTTGCAAGTCTAGATCGGTGAATAGTCAAGA  118
             |||  ||| |  ||||||||||| ||||| |||||||| || | |  ||| |||| |||
Sbjct  621  TGCCAGACT-T-TGTAGATCAGGAACGCTTGTGCAAGTCAAGGTTGCCGAAAAGTCGAGA  678

Query  119  AGAGTACAAAAAATGTAGCGGCGGACGAGG-AAGAATTGCATCAAAGGTGACAATGGAGC  177
            ||| ||||||| |||||| || |||| ||| |||  |||  || |||||||| |||||||
Sbjct  679  AGAATACAAAAGATGTAGTGGTGGACAAGGAAAG-GTTGGGTCCAAGGTGACCATGGAGC  737

Query  178  TTATCTTCCAGCCTTCTTCTCTTCTTAATCTGCCACCGGTTTCTTGGATTATCCGTGGTA  237
              |||||  |||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct  738  AGATCTTTAAGCCTTCTCCTCTTCTTAATCTGCCACCGGTTTCTTGGATAATCCGTGGGA  797

Query  238  TATATCACCATCAAAATCACCAAAATGT-TGCTAGAAGATCTTAGAAAA  285
            | || | | ||||||| |||||| || | |||| |||||| || |||||
Sbjct  798  T-TA-C-C-ATCAAAACCACCAAGAT-TCTGCTCGAAGATATTCGAAAA  841



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5