BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921415
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27670.1 | Symbols: | Domain of unknown function DUF220 | c... 300 2e-80
AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | c... 250 2e-65
AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 231 8e-60
AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | c... 183 2e-45
AT1G23510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 139 5e-32
> AT2G27670.1 | Symbols: | Domain of unknown function DUF220 |
chr2:11801568-11802891 REVERSE LENGTH=882
Length=882
Score = 300 bits (162), Expect = 2e-80
Identities = 293/354 (83%), Gaps = 17/354 (5%)
Strand=Plus/Plus
Query 81 AGGCAAGCAGGACTTTGG-CTAGGTACAGAGAAGAAGAATCCATGGTATGATGCTCCTGC 139
||||||||| |||||||| || ||| || | || ||| ||||||||||||||||||||||
Sbjct 208 AGGCAAGCAAGACTTTGGTCT-GGTCCAAATAACAAGCATCCATGGTATGATGCTCCTGC 266
Query 140 TAAGGTGAAGGTGAAAACCAAAAATGGTATTTGTC-ATATGAACATAAAATTTACATTGG 198
|| ||||||||||||||| ||||| ||| |||| | || |||||||| |||| |||||||
Sbjct 267 TACGGTGAAGGTGAAAACAAAAAAGGGTCTTTG-CAATTTGAACATAGAATTCACATTGG 325
Query 199 GA-GAGCCTCCTCAAGGAGTCTATGAGATGCTCACTAATCCAAGAAACATAACA-TACTT 256
|| | |||||||||| ||||| ||||||||| ||||||||||||||||||| | | |||
Sbjct 326 GATG-GCCTCCTCAATTAGTCTCTGAGATGCTTACTAATCCAAGAAACATAA-ATTTCTT 383
Query 257 C-GATT-TT-GACAAGCG--TTGGCGACAACGCCTGGAAAACAAATCAACAAAGGTTTTG 311
| |||| || || || | || || ||||| |||| |||||||||||||||||||||
Sbjct 384 CAGATTATTCGA-TAGGGACTT-TCGCCAACGTTTGGACAACAAATCAACAAAGGTTTTG 441
Query 312 AAGAAGGATGGACCGAGGCAGATCACG-GATGTGAGGAAAGCTCTGAGATGGAAGTTCCT 370
|||||||| |||||| ||||||||||| || |||| ||| || |||||| ||| ||||
Sbjct 442 AAGAAGGACGGACCGCGGCAGATCACGAGA-GTGAAAAAAACTTTGAGATATAAGCTCCT 500
Query 371 TTTGTGGTCTGGAACTATCCCGATTCATCTAATTATCGATGAAAACCATCAAAA 424
| | | ||| | |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 501 TGGGCGCTCTATAGCTATCCCGATACATCTAATCATCGATGAAAACCATAAAAA 554
> AT1G23660.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8371609-8372845 REVERSE LENGTH=868
Length=868
Score = 250 bits (135), Expect = 2e-65
Identities = 274/338 (81%), Gaps = 22/338 (7%)
Strand=Plus/Plus
Query 106 CAGA-GAAGAAGAATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGAAAACCAAAAAT 164
|||| ||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 234 CAGAGGAA-AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAAT 292
Query 165 GGTATTTGTCATATGAACATAAAATTTACATTGGGAG-AGCCTCCTCAAGGAGTCTATGA 223
||| |||| |||||||||||| |||||| | ||||| | |||||| |||||||||| ||
Sbjct 293 GGTCTTTGCCATATGAACATAGAATTTAAACTGGGATTA-CCTCCTGAAGGAGTCTACGA 351
Query 224 GATGCTCACTAATCCAAGA-AACATAAC-A-TACTTCGATTTTGACAAGCGTTGG-CGAC 279
|||| |||||||||||| | ||| || | | | |||| | |||||| | || || |
Sbjct 352 GATGTTCACTAATCCAA-ACAAC-TATCCAGT-CTTCAAAAAGGACAAG-GCCGGGCGCC 407
Query 280 AACGCCTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCACGG 339
|||| |||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||
Sbjct 408 AACGTCTGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGG 467
Query 340 ATG-TGAGGAAA-GCTCTG-AGATGGAAGTTCCTTTTG-TGGTCTGGAACTATCCCGATT 395
| | || | ||| | | || | ||||| |||||||| | || || | ||||||||
Sbjct 468 A-GATG-GAAAAAGATTTGTAC-TGGAACTTCCTTTTCATA-TCCAGAGCAATCCCGATA 523
Query 396 CATCTAATTATCGATGAAAACCATCAA-AATCTTACAG 432
|||||| ||||||||||||| ||| || ||||| ||||
Sbjct 524 CATCTAGTTATCGATGAAAATCAT-AAGAATCTCACAG 560
> AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED
DURING: 4 anthesis, petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein
match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1);
Has 270 Blast hits to 130 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:8367170-8370280 REVERSE LENGTH=1275
Length=1275
Score = 231 bits (125), Expect = 8e-60
Identities = 289/366 (79%), Gaps = 20/366 (5%)
Strand=Plus/Plus
Query 77 AAAG-AGGCAAGCAGGACTTTGGCTAGGTACAGAGAAGAAGA-ATCCATGGTATGATGCT 134
|||| ||| || || |||||||| || | | ||||| || | |||||||||||||||||
Sbjct 612 AAAGAAGG-AATCAAGACTTTGGAGAGCTGCTGAGAA-AAAACATCCATGGTATGATGCT 669
Query 135 CCTGCTAAGGTGAAGGTGAAAACCAAAAATG-GTATTTGTCATATGAACATAAAATTTAC 193
|| |||||||||||||||| || |||||| | || |||| ||| |||||||| |||| |
Sbjct 670 CCAGCTAAGGTGAAGGTGACAA-CAAAAAAGTGTCTTTGCCATTTGAACATAGAATTCAA 728
Query 194 ATTGGGAGAGCCTCCTCAAGGAGTCTATGAGATGCTCACTAATCCAAGA-AACATAACAT 252
||||||| ||||||| ||| ||||||||||||| |||||||||||| | ||| | | |
Sbjct 729 ATTGGGATTGCCTCCTGAAGCAGTCTATGAGATGTTCACTAATCCAA-ACAACTTTCCTT 787
Query 253 ACTTCGATTTTGACAA-G-CGTTGGCGACAACGCCTGGAAAACAAATCAACAAAGGTTTT 310
|||| | || || | || |||| ||||| |||||||||||||||||||||||||
Sbjct 788 TCTTCAAAGAGGATAAGGCCG--GGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTT 845
Query 311 GAAGAAGGATGGACCGAGGCAGATCACGGATGTGAGGAAA-GCTCTGAGATGGAAGTTCC 369
||||||||||||||| ||||||| |||||| ||| | ||| ||| || ||||| || |
Sbjct 846 GAAGAAGGATGGACCAAGGCAGACCACGGAGGTG-GAAAAAGCTTTGTCCTGGAACTTTC 904
Query 370 TTTTGTGGTCTGGA-ACTATCCCGATTCATCTAATTAT-CGATGAAAACCATCAA-AATC 426
|| ||| || | | | |||||| || ||||| || || | | ||||||||| || ||||
Sbjct 905 TTGGGTGTTCAGTAGA-TATCCCAATACATCTTATAATTC-ACGAAAACCAT-AAGAATC 961
Query 427 TTACAG 432
| ||||
Sbjct 962 TAACAG 967
Score = 158 bits (85), Expect = 1e-37
Identities = 195/246 (79%), Gaps = 15/246 (6%)
Strand=Plus/Plus
Query 811 ATTATGACTTAGAAGAAGTAAAGAGGC-AAGTAGAACTTTGGATAGTTGCAAAGAATAAG 869
|||||||| ||| ||| ||||||| || | ||||| |||| || |||| |||| |||
Sbjct 137 ATTATGACGAAGAGGAAACCAAGAGGCAAAAT-GAACTATGGAAAGCTGCAGAGAAGAAG 195
Query 870 CTTCCATGGTATGATGCTCCTGCTAAAGTGAAGGAAAATAAATCAACAAAGGTTTTGAAG 929
| ||||||||||||||| ||| |||| ||||||| || ||||||| |||||||||||||
Sbjct 196 CATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACCAAATCAAGAAAGGTTTTGAAG 255
Query 930 AAGGATGGACCGAGGCAAATCACG-GATGTAGA-GAAAGCTTTGAG-ATGGAAGCTC-CT 985
||||||||||||||||| || | ||| | || ||||||| || | |||| | || ||
Sbjct 256 AAGGATGGACCGAGGCAGATTGTGAGAT-T-GAAGAAAGCTGTG-GCATGGGA-CTTTCT 311
Query 986 TTGTTGGTCTGGAGC-TATCCCGATACATCTCATTATCGAT-TAAACCATCAAA-ATCTT 1042
|| |||||||||| | ||| |||| |||| ||| ||||| ||||| | ||| |||||
Sbjct 312 ATGGTGGTCTGGAGAATTTCC-GATAAATCTAATTGTCGATGTAAACAAA-AAAGATCTT 369
Query 1043 ACAGCA 1048
||||||
Sbjct 370 ACAGCA 375
Score = 110 bits (59), Expect = 4e-23
Identities = 117/144 (81%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 293 CAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCACG-GATGTGAGGAAAG 351
|||||||| ||||||||||||||||||||||||||||||||| | ||| ||| |||||
Sbjct 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGTGAGAT-TGAAGAAAG 292
Query 352 CTCTGAG-ATGGAAGTTCCTTTTGTGGTCTGGA-ACTATCCCGATTCATCTAATTATCGA 409
|| || | |||| | || || | |||||||||| | | ||| ||| |||||||| ||||
Sbjct 293 CTGTG-GCATGGGACTTTCTATGGTGGTCTGGAGAATTTCC-GATAAATCTAATTGTCGA 350
Query 410 TGAAAACCATCAAA-ATCTTACAG 432
|| |||| | ||| |||||||||
Sbjct 351 TGTAAACAAA-AAAGATCTTACAG 373
Score = 106 bits (57), Expect = 5e-22
Identities = 121/151 (80%), Gaps = 7/151 (5%)
Strand=Plus/Plus
Query 902 GGAAAATAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAAATCACGGATGTAGA 961
|||||| |||||||||||||||||||||||||||||||| ||||| | |||||| || ||
Sbjct 822 GGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCAAGGCAGACCACGGAGGTGGA 881
Query 962 GAAAGCTTTGAGATGGAAGCTC-CTTTGTTGGTCTGGAGCTATCCCGATACATCTCATTA 1020
||||||||| ||||| || ||| | || || | || |||||| |||||||| || |
Sbjct 882 AAAAGCTTTGTCCTGGAA-CTTTCTTGGGTGTTCAGTAGATATCCCAATACATCTTATAA 940
Query 1021 T-CGATTAAA-CCATCAA-AATCTTACAGCA 1048
| | | ||| |||| || ||||| ||||||
Sbjct 941 TTC-ACGAAAACCAT-AAGAATCTAACAGCA 969
> AT1G23690.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8377262-8378769 REVERSE LENGTH=1128
Length=1128
Score = 183 bits (99), Expect = 2e-45
Identities = 182/221 (82%), Gaps = 10/221 (5%)
Strand=Plus/Plus
Query 438 TGGAAAATAGACCCACTATACGTAGATTCAGAACGCTTGTGCAAGCACATTGAGCCGAAG 497
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 700 TGGAAAATAGAGCCACTATACGTAGATTCAGAACGCTTGTGCAAGGACAGAAAGCCGAAG 759
Query 498 AATCCG-GAAGAATACAAAAGATGTAGCGGTGGACAGGGAA-GGATTGCATCGAAGGTGG 555
| || | ||||||||||||||||||||||| ||| | |||| || |||||||||| |||
Sbjct 760 AGTC-GAGAAGAATACAAAAGATGTAGCGGCGGAGAAGGAAAGG-TTGCATCGAAAGTGA 817
Query 556 CAATGGAGATAAT-CTTTCAGCCTTCTTCTCTTCTTAATGTGCCACCGGTTTCTTTTGTT 614
||||||| ||| ||| || |||| || |||||||||| | ||||| |||||| ||
Sbjct 818 CAATGGACC-AATACTTCCAACCTTATTTTCTTCTTAATCTACCACCACTTTCTTG-GT- 874
Query 615 ACC--CGTTGGATTACCATCAAAGCCACCAAGATTTTGCTC 653
|| ||| |||| ||||||||| ||||||| | | |||||
Sbjct 875 ACATTCGTGGGATCACCATCAAAACCACCAAAAATCTGCTC 915
> AT1G23510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Domain of unknown function (DUF220)
(TAIR:AT1G23520.1); Has 133 Blast hits to 120 proteins in
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:8341449-8342796 REVERSE LENGTH=962
Length=962
Score = 139 bits (75), Expect = 5e-32
Identities = 168/212 (79%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 453 CTATACGTAGATTCAGAACGCTTGTGCAAGCACATTGA-GCCGAAGAATCCGGAAGAATA 511
||||||||||||||||||||||||||||| || | || |||||||| | | ||||||||
Sbjct 720 CTATACGTAGATTCAGAACGCTTGTGCAAACAAAA-GAAGCCGAAGAGTACAGAAGAATA 778
Query 512 CAAAAGATGTAGCGGTGGACAGGGAAGGATTGCATCGAAGGTGGCAATGGAG-ATAATCT 570
| ||||||||||| | ||||| |||||||||| ||||| ||| || |||| | | | |
Sbjct 779 CGAAAGATGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGA-TGT 837
Query 571 TTCAGCCTTCTTCTCTTCTTAATGTGCCACCGGTTTCTTTTGTTACC--CGTTGGATTAC 628
|| ||||||||| | || ||||| |||||||| |||||| || || ||| |||| ||
Sbjct 838 TTAAGCCTTCTTTTATTTTTAATCTGCCACCGATTTCTTG-GT-ACGTTCGTCGGATAAC 895
Query 629 CATCAA-AGCCACCAAGATTTTGCTCGAAGAT 659
|||||| | ||| || | | || ||||||||
Sbjct 896 CATCAAGA-CCATGAAAACTCTGATCGAAGAT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5