BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921415 Length=1048 Score E Sequences producing significant alignments: (Bits) Value AT2G27670.1 | Symbols: | Domain of unknown function DUF220 | c... 300 2e-80 AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | c... 250 2e-65 AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 231 8e-60 AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | c... 183 2e-45 AT1G23510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 139 5e-32 > AT2G27670.1 | Symbols: | Domain of unknown function DUF220 | chr2:11801568-11802891 REVERSE LENGTH=882 Length=882 Score = 300 bits (162), Expect = 2e-80 Identities = 293/354 (83%), Gaps = 17/354 (5%) Strand=Plus/Plus Query 81 AGGCAAGCAGGACTTTGG-CTAGGTACAGAGAAGAAGAATCCATGGTATGATGCTCCTGC 139 ||||||||| |||||||| || ||| || | || ||| |||||||||||||||||||||| Sbjct 208 AGGCAAGCAAGACTTTGGTCT-GGTCCAAATAACAAGCATCCATGGTATGATGCTCCTGC 266 Query 140 TAAGGTGAAGGTGAAAACCAAAAATGGTATTTGTC-ATATGAACATAAAATTTACATTGG 198 || ||||||||||||||| ||||| ||| |||| | || |||||||| |||| ||||||| Sbjct 267 TACGGTGAAGGTGAAAACAAAAAAGGGTCTTTG-CAATTTGAACATAGAATTCACATTGG 325 Query 199 GA-GAGCCTCCTCAAGGAGTCTATGAGATGCTCACTAATCCAAGAAACATAACA-TACTT 256 || | |||||||||| ||||| ||||||||| ||||||||||||||||||| | | ||| Sbjct 326 GATG-GCCTCCTCAATTAGTCTCTGAGATGCTTACTAATCCAAGAAACATAA-ATTTCTT 383 Query 257 C-GATT-TT-GACAAGCG--TTGGCGACAACGCCTGGAAAACAAATCAACAAAGGTTTTG 311 | |||| || || || | || || ||||| |||| ||||||||||||||||||||| Sbjct 384 CAGATTATTCGA-TAGGGACTT-TCGCCAACGTTTGGACAACAAATCAACAAAGGTTTTG 441 Query 312 AAGAAGGATGGACCGAGGCAGATCACG-GATGTGAGGAAAGCTCTGAGATGGAAGTTCCT 370 |||||||| |||||| ||||||||||| || |||| ||| || |||||| ||| |||| Sbjct 442 AAGAAGGACGGACCGCGGCAGATCACGAGA-GTGAAAAAAACTTTGAGATATAAGCTCCT 500 Query 371 TTTGTGGTCTGGAACTATCCCGATTCATCTAATTATCGATGAAAACCATCAAAA 424 | | | ||| | |||||||||| |||||||| ||||||||||||||| |||| Sbjct 501 TGGGCGCTCTATAGCTATCCCGATACATCTAATCATCGATGAAAACCATAAAAA 554 > AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | chr1:8371609-8372845 REVERSE LENGTH=868 Length=868 Score = 250 bits (135), Expect = 2e-65 Identities = 274/338 (81%), Gaps = 22/338 (7%) Strand=Plus/Plus Query 106 CAGA-GAAGAAGAATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGAAAACCAAAAAT 164 |||| ||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 234 CAGAGGAA-AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAAT 292 Query 165 GGTATTTGTCATATGAACATAAAATTTACATTGGGAG-AGCCTCCTCAAGGAGTCTATGA 223 ||| |||| |||||||||||| |||||| | ||||| | |||||| |||||||||| || Sbjct 293 GGTCTTTGCCATATGAACATAGAATTTAAACTGGGATTA-CCTCCTGAAGGAGTCTACGA 351 Query 224 GATGCTCACTAATCCAAGA-AACATAAC-A-TACTTCGATTTTGACAAGCGTTGG-CGAC 279 |||| |||||||||||| | ||| || | | | |||| | |||||| | || || | Sbjct 352 GATGTTCACTAATCCAA-ACAAC-TATCCAGT-CTTCAAAAAGGACAAG-GCCGGGCGCC 407 Query 280 AACGCCTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCACGG 339 |||| |||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||| Sbjct 408 AACGTCTGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGG 467 Query 340 ATG-TGAGGAAA-GCTCTG-AGATGGAAGTTCCTTTTG-TGGTCTGGAACTATCCCGATT 395 | | || | ||| | | || | ||||| |||||||| | || || | |||||||| Sbjct 468 A-GATG-GAAAAAGATTTGTAC-TGGAACTTCCTTTTCATA-TCCAGAGCAATCCCGATA 523 Query 396 CATCTAATTATCGATGAAAACCATCAA-AATCTTACAG 432 |||||| ||||||||||||| ||| || ||||| |||| Sbjct 524 CATCTAGTTATCGATGAAAATCAT-AAGAATCTCACAG 560 > AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8367170-8370280 REVERSE LENGTH=1275 Length=1275 Score = 231 bits (125), Expect = 8e-60 Identities = 289/366 (79%), Gaps = 20/366 (5%) Strand=Plus/Plus Query 77 AAAG-AGGCAAGCAGGACTTTGGCTAGGTACAGAGAAGAAGA-ATCCATGGTATGATGCT 134 |||| ||| || || |||||||| || | | ||||| || | ||||||||||||||||| Sbjct 612 AAAGAAGG-AATCAAGACTTTGGAGAGCTGCTGAGAA-AAAACATCCATGGTATGATGCT 669 Query 135 CCTGCTAAGGTGAAGGTGAAAACCAAAAATG-GTATTTGTCATATGAACATAAAATTTAC 193 || |||||||||||||||| || |||||| | || |||| ||| |||||||| |||| | Sbjct 670 CCAGCTAAGGTGAAGGTGACAA-CAAAAAAGTGTCTTTGCCATTTGAACATAGAATTCAA 728 Query 194 ATTGGGAGAGCCTCCTCAAGGAGTCTATGAGATGCTCACTAATCCAAGA-AACATAACAT 252 ||||||| ||||||| ||| ||||||||||||| |||||||||||| | ||| | | | Sbjct 729 ATTGGGATTGCCTCCTGAAGCAGTCTATGAGATGTTCACTAATCCAA-ACAACTTTCCTT 787 Query 253 ACTTCGATTTTGACAA-G-CGTTGGCGACAACGCCTGGAAAACAAATCAACAAAGGTTTT 310 |||| | || || | || |||| ||||| ||||||||||||||||||||||||| Sbjct 788 TCTTCAAAGAGGATAAGGCCG--GGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTT 845 Query 311 GAAGAAGGATGGACCGAGGCAGATCACGGATGTGAGGAAA-GCTCTGAGATGGAAGTTCC 369 ||||||||||||||| ||||||| |||||| ||| | ||| ||| || ||||| || | Sbjct 846 GAAGAAGGATGGACCAAGGCAGACCACGGAGGTG-GAAAAAGCTTTGTCCTGGAACTTTC 904 Query 370 TTTTGTGGTCTGGA-ACTATCCCGATTCATCTAATTAT-CGATGAAAACCATCAA-AATC 426 || ||| || | | | |||||| || ||||| || || | | ||||||||| || |||| Sbjct 905 TTGGGTGTTCAGTAGA-TATCCCAATACATCTTATAATTC-ACGAAAACCAT-AAGAATC 961 Query 427 TTACAG 432 | |||| Sbjct 962 TAACAG 967 Score = 158 bits (85), Expect = 1e-37 Identities = 195/246 (79%), Gaps = 15/246 (6%) Strand=Plus/Plus Query 811 ATTATGACTTAGAAGAAGTAAAGAGGC-AAGTAGAACTTTGGATAGTTGCAAAGAATAAG 869 |||||||| ||| ||| ||||||| || | ||||| |||| || |||| |||| ||| Sbjct 137 ATTATGACGAAGAGGAAACCAAGAGGCAAAAT-GAACTATGGAAAGCTGCAGAGAAGAAG 195 Query 870 CTTCCATGGTATGATGCTCCTGCTAAAGTGAAGGAAAATAAATCAACAAAGGTTTTGAAG 929 | ||||||||||||||| ||| |||| ||||||| || ||||||| ||||||||||||| Sbjct 196 CATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACCAAATCAAGAAAGGTTTTGAAG 255 Query 930 AAGGATGGACCGAGGCAAATCACG-GATGTAGA-GAAAGCTTTGAG-ATGGAAGCTC-CT 985 ||||||||||||||||| || | ||| | || ||||||| || | |||| | || || Sbjct 256 AAGGATGGACCGAGGCAGATTGTGAGAT-T-GAAGAAAGCTGTG-GCATGGGA-CTTTCT 311 Query 986 TTGTTGGTCTGGAGC-TATCCCGATACATCTCATTATCGAT-TAAACCATCAAA-ATCTT 1042 || |||||||||| | ||| |||| |||| ||| ||||| ||||| | ||| ||||| Sbjct 312 ATGGTGGTCTGGAGAATTTCC-GATAAATCTAATTGTCGATGTAAACAAA-AAAGATCTT 369 Query 1043 ACAGCA 1048 |||||| Sbjct 370 ACAGCA 375 Score = 110 bits (59), Expect = 4e-23 Identities = 117/144 (81%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 293 CAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCACG-GATGTGAGGAAAG 351 |||||||| ||||||||||||||||||||||||||||||||| | ||| ||| ||||| Sbjct 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGTGAGAT-TGAAGAAAG 292 Query 352 CTCTGAG-ATGGAAGTTCCTTTTGTGGTCTGGA-ACTATCCCGATTCATCTAATTATCGA 409 || || | |||| | || || | |||||||||| | | ||| ||| |||||||| |||| Sbjct 293 CTGTG-GCATGGGACTTTCTATGGTGGTCTGGAGAATTTCC-GATAAATCTAATTGTCGA 350 Query 410 TGAAAACCATCAAA-ATCTTACAG 432 || |||| | ||| ||||||||| Sbjct 351 TGTAAACAAA-AAAGATCTTACAG 373 Score = 106 bits (57), Expect = 5e-22 Identities = 121/151 (80%), Gaps = 7/151 (5%) Strand=Plus/Plus Query 902 GGAAAATAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAAATCACGGATGTAGA 961 |||||| |||||||||||||||||||||||||||||||| ||||| | |||||| || || Sbjct 822 GGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCAAGGCAGACCACGGAGGTGGA 881 Query 962 GAAAGCTTTGAGATGGAAGCTC-CTTTGTTGGTCTGGAGCTATCCCGATACATCTCATTA 1020 ||||||||| ||||| || ||| | || || | || |||||| |||||||| || | Sbjct 882 AAAAGCTTTGTCCTGGAA-CTTTCTTGGGTGTTCAGTAGATATCCCAATACATCTTATAA 940 Query 1021 T-CGATTAAA-CCATCAA-AATCTTACAGCA 1048 | | | ||| |||| || ||||| |||||| Sbjct 941 TTC-ACGAAAACCAT-AAGAATCTAACAGCA 969 > AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | chr1:8377262-8378769 REVERSE LENGTH=1128 Length=1128 Score = 183 bits (99), Expect = 2e-45 Identities = 182/221 (82%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 438 TGGAAAATAGACCCACTATACGTAGATTCAGAACGCTTGTGCAAGCACATTGAGCCGAAG 497 ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 700 TGGAAAATAGAGCCACTATACGTAGATTCAGAACGCTTGTGCAAGGACAGAAAGCCGAAG 759 Query 498 AATCCG-GAAGAATACAAAAGATGTAGCGGTGGACAGGGAA-GGATTGCATCGAAGGTGG 555 | || | ||||||||||||||||||||||| ||| | |||| || |||||||||| ||| Sbjct 760 AGTC-GAGAAGAATACAAAAGATGTAGCGGCGGAGAAGGAAAGG-TTGCATCGAAAGTGA 817 Query 556 CAATGGAGATAAT-CTTTCAGCCTTCTTCTCTTCTTAATGTGCCACCGGTTTCTTTTGTT 614 ||||||| ||| ||| || |||| || |||||||||| | ||||| |||||| || Sbjct 818 CAATGGACC-AATACTTCCAACCTTATTTTCTTCTTAATCTACCACCACTTTCTTG-GT- 874 Query 615 ACC--CGTTGGATTACCATCAAAGCCACCAAGATTTTGCTC 653 || ||| |||| ||||||||| ||||||| | | ||||| Sbjct 875 ACATTCGTGGGATCACCATCAAAACCACCAAAAATCTGCTC 915 > AT1G23510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23520.1); Has 133 Blast hits to 120 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8341449-8342796 REVERSE LENGTH=962 Length=962 Score = 139 bits (75), Expect = 5e-32 Identities = 168/212 (79%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 453 CTATACGTAGATTCAGAACGCTTGTGCAAGCACATTGA-GCCGAAGAATCCGGAAGAATA 511 ||||||||||||||||||||||||||||| || | || |||||||| | | |||||||| Sbjct 720 CTATACGTAGATTCAGAACGCTTGTGCAAACAAAA-GAAGCCGAAGAGTACAGAAGAATA 778 Query 512 CAAAAGATGTAGCGGTGGACAGGGAAGGATTGCATCGAAGGTGGCAATGGAG-ATAATCT 570 | ||||||||||| | ||||| |||||||||| ||||| ||| || |||| | | | | Sbjct 779 CGAAAGATGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGA-TGT 837 Query 571 TTCAGCCTTCTTCTCTTCTTAATGTGCCACCGGTTTCTTTTGTTACC--CGTTGGATTAC 628 || ||||||||| | || ||||| |||||||| |||||| || || ||| |||| || Sbjct 838 TTAAGCCTTCTTTTATTTTTAATCTGCCACCGATTTCTTG-GT-ACGTTCGTCGGATAAC 895 Query 629 CATCAA-AGCCACCAAGATTTTGCTCGAAGAT 659 |||||| | ||| || | | || |||||||| Sbjct 896 CATCAAGA-CCATGAAAACTCTGATCGAAGAT 926 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51389532381 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5