BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921417
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | c... 285 3e-76
AT1G23610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 268 3e-71
AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 235 3e-61
AT1G23600.1 | Symbols: | Domain of unknown function DUF220 | c... 75.0 8e-13
> AT1G23660.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8371609-8372845 REVERSE LENGTH=868
Length=868
Score = 285 bits (154), Expect = 3e-76
Identities = 326/405 (80%), Gaps = 28/405 (7%)
Strand=Plus/Plus
Query 216 GCGGTAGATACTAAATATTTCGACGTAAATGATA-TGAAGAG-GCAATCAGAACTTTGGC 273
||||||||||||||||||| |||| || |||| | ||| ||| | || |||| |||||
Sbjct 170 GCGGTAGATACTAAATATTACGACTTAGATGA-AGTGAGGAGAG-AAGGAGAAATTTGG- 226
Query 274 ATG-G-AG-AGAAGAAGAAGCATCCGTGGTATCCTGCTCCTGCCAAGGTGGAGGTGAAAA 330
| | | | ||| ||| |||||||| |||||| ||||||||| |||||| |||||| ||
Sbjct 227 A-GAGCTGCAGAGGAA-AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAA 284
Query 331 CAAAAAATGGTCTTTGCCATATGAACATAGAATTCACAATTGG-AGTAATTCCTCCAGCA 389
|||||||||||||||||||||||||||||||||| | || ||| | || |||| || |
Sbjct 285 CAAAAAATGGTCTTTGCCATATGAACATAGAATTTA-AACTGGGATTACCTCCTGAAGGA 343
Query 390 GTCTATGAGATGCTCACTAATCCAAGA-AACATATC-ATTCTTCATTAAGGACGAACGTT 447
||||| |||||| |||||||||||| | ||| |||| | |||||| |||||| || |
Sbjct 344 GTCTACGAGATGTTCACTAATCCAA-ACAAC-TATCCAGTCTTCAAAAAGGAC-AAGGCC 400
Query 448 GG-CGACAACGTCTGGAAAACAAATCAACAAAGGTTTTGAAGAAAGATGGACCGAGGCAG 506
|| || |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 401 GGGCGCCAACGTCTGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAG 460
Query 507 ATCACGGATG-TGAGAAAA-GCTTTG-AGATGGAAGTTCATTATG-TGGTCTGGAGCTAT 562
| |||||| | || ||||| | |||| | ||||| ||| || | | || |||| ||
Sbjct 461 ACCACGGA-GATG-GAAAAAGATTTGTAC-TGGAACTTCCTTTTCATA-TCCAGAGCAAT 516
Query 563 CCCTATTCATCTAATTATCGATTAAAATCATCAA-AATCTTACAG 606
||| || |||||| |||||||| |||||||| || ||||| ||||
Sbjct 517 CCCGATACATCTAGTTATCGATGAAAATCAT-AAGAATCTCACAG 560
> AT1G23610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G23640.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:8362864-8363675 REVERSE LENGTH=667
Length=667
Score = 268 bits (145), Expect = 3e-71
Identities = 198/222 (89%), Gaps = 10/222 (5%)
Strand=Plus/Plus
Query 1 ACTTAAAATTTCAAAGAGAA--ATGCGTGTATTTCCTGGATTTGGTGGCTGGATCAATCA 58
|||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 81 ACTTAATATATCAAAGAGAATTATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCA 140
Query 59 GAACT-TTCAAGAGCGTCCTGAGGCTGACA-CTGGGAGATCCGATGA-TGTTAAATCTAA 115
||| | ||||| | |||||||||||||| | |||||||||| || || |||||||||||
Sbjct 141 GAA-TATTCAACAACGTCCTGAGGCTGA-ATCTGGGAGATCTGA-GAATGTTAAATCTAG 197
Query 116 TTCAGTGTCAGAGAAAGATACTAATCTAAAACCATGGTATGATGAACCTGGTAAGACGGC 175
| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 198 TCCAGTGTCAGAGAAAGACACTAATCTAAAACCTTGGTATGATGAACCTGGTAAGACTAC 257
Query 176 AGCTATGGAACCTGGGGATGTTA-GATCTAAGCCATTGCATG 216
||||||||||||||||||||| | | ||||||||| ||||||
Sbjct 258 AGCTATGGAACCTGGGGATGTAAAG-TCTAAGCCACTGCATG 298
> AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED
DURING: 4 anthesis, petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein
match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1);
Has 270 Blast hits to 130 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:8367170-8370280 REVERSE LENGTH=1275
Length=1275
Score = 235 bits (127), Expect = 3e-61
Identities = 319/407 (78%), Gaps = 32/407 (8%)
Strand=Plus/Plus
Query 216 GCGGTAGATACTAAATATT-TCGACGTAAATGATATGAAG-AGGCAATC-AGAACTTTGG 272
||||||||| ||||||||| | ||| || ||| | ||| ||| |||| || |||||||
Sbjct 577 GCGGTAGATCCTAAATATTAT-GACTTAGCTGAGGTAAAGAAGG-AATCAAG-ACTTTGG 633
Query 273 -CA--TGGAGAGAAGAAGAAGCATCCGTGGTATCCTGCTCCTGCCAAGGTGGAGGTGAAA 329
| || ||||| || || ||||| |||||| |||||| || |||||| |||||| |
Sbjct 634 AGAGCTGCTGAGAA-AA-AA-CATCCATGGTATGATGCTCCAGCTAAGGTGAAGGTGACA 690
Query 330 ACAAAAAATG-GTCTTTGCCATATGAACATAGAATTCACAATT-GGAGTAATTCCTCCAG 387
|||||||| | ||||||||||| ||||||||||||||| |||| ||| | |||| ||
Sbjct 691 ACAAAAAA-GTGTCTTTGCCATTTGAACATAGAATTCA-AATTGGGATTGCCTCCTGAAG 748
Query 388 CAGTCTATGAGATGCTCACTAATCCAAGA-AACATAT-CATTCTTCATTA-AGGACGAAC 444
|||||||||||||| |||||||||||| | ||| | | | ||||||| | |||| ||
Sbjct 749 CAGTCTATGAGATGTTCACTAATCCAA-ACAAC-TTTCCTTTCTTCA-AAGAGGA-TAAG 804
Query 445 G-TTGGCGACAACGTCTGGAAAACAAATCAACAAAGGTTTTGAAGAAAGATGGACCGAGG 503
| |||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 805 GCCGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCAAGG 864
Query 504 CAGATCACGGATGTGAGAAAA-GCTTTGAGATGGAAGTT-CATTATGTGGTCTGGAGCTA 561
|||| |||||| ||| ||||| |||||| ||||| || | || ||| || | || ||
Sbjct 865 CAGACCACGGAGGTG-GAAAAAGCTTTGTCCTGGAACTTTC-TTGGGTGTTCAGTAGATA 922
Query 562 TCCCTATTCATCTAATTAT-CGATTAAAATCATCAA-AATCTTACAG 606
|||| || ||||| || || | | |||| ||| || ||||| ||||
Sbjct 923 TCCCAATACATCTTATAATTC-ACGAAAACCAT-AAGAATCTAACAG 967
Score = 145 bits (78), Expect = 6e-34
Identities = 107/121 (88%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 21 ATGCGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACTTTCAAGAGCGTCCTGAG 80
||| |||||||||||||||||||||||||||||||||||||| | ||| ||| |||| ||
Sbjct 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATCCAACAGCCTCCTAAG 60
Query 81 GCTGACACTGGGAGATCCGATGA-TGTTAAATCTAATTCAGTGTCAGAGAAAGATACTAA 139
||||| | ||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGAGTCCAGGAGATCTAA-GAATGTTAAATCTAATTCAGTGTCAGAGAAAGATACTAA 119
Query 140 T 140
|
Sbjct 120 T 120
> AT1G23600.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8361004-8362485 REVERSE LENGTH=1134
Length=1134
Score = 75.0 bits (40), Expect = 8e-13
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 9 TTTCAAAGAGAAATGCGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACTTTCAA 68
||||| || |||||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 116 TTTCATAGTGAAATGAATGTGTTTCCTGGATTTGGTGGCTGGATCAATCAGAACAATCAA 175
Query 69 GAGC 72
|||
Sbjct 176 CAGC 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5