BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921418
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23580.1 | Symbols: | Domain of unknown function DUF220 | c... 508 2e-143
AT1G23620.1 | Symbols: | pseudogene, hypothetical protein | ch... 449 2e-125
AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 183 2e-45
> AT1G23580.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8357446-8358805 REVERSE LENGTH=1002
Length=1002
Score = 508 bits (275), Expect = 2e-143
Identities = 618/773 (80%), Gaps = 66/773 (9%)
Strand=Plus/Plus
Query 12 AAAATTTG--AGGGCAAA-AATGAGG-GTATTTTCTG-GATTTGGTGGC-TGGATAAATC 65
|||||||| || | ||| |||| || |||||| ||| | ||||| || ||||| ||||
Sbjct 81 AAAATTTGATAGAG-AAATAATG-GGTGTATTTCCTGCG-TTTGG-AGCATGGATCAATC 136
Query 66 AGAACAT-TCAAGAACCTCCTAAGGCTGAGT-CCAAAAGATCTGTGGATGTT-AATACTA 122
|||| | |||| | |||| | ||| || | |||| || |||| | ||||| ||| |||
Sbjct 137 AGAA-TTCTCAACAGCCTCTTGAGGAAGA-TCCCAAGAGCTCTGAGCATGTTGAAT-CTA 193
Query 123 ATTCAGTGTCAGAGAAAGAT-A--GTAATGATCAAGA--ACTACAT--TATGACAAAGAG 175
| || | ||||||| ||| | || || | |||| | | || |||||| ||||
Sbjct 194 AGTCGGCATCAGAGATGGATAATGGTCCTGCT-AAGATGAAAAAATACTATGACGAAGAT 252
Query 176 GAGAT-GAAGAAACAAGGA-CAACTTTGGATAGATGCAGAGAAGAAGCAGCCATGGTATG 233
||| | | ||| ||| || ||||||||| || ||||||||||||||| |||||| | |
Sbjct 253 GAG-TGGGAGAGGCAA-GATAAACTTTGGACAGCTGCAGAGAAGAAGCATCCATGGAAAG 310
Query 234 ATGCCCCTCCTAAGGTTAAGTTGACAACAAAAAAGGG-ACTATGCCATATGAACATAGAA 292
|||||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||
Sbjct 311 ATGCCCCTCCTAAGGTTAAGGTGACAACAAAAAAGGGTA-TATGCCATATGCACATAGAA 369
Query 293 CTGACATTGGGCTGGTATCCTGATGGAGTCTTCGAACTTTTCACTAATCCAAATGACGG- 351
|||||||||| | | |||||||||||||||||||||||||||||||||| || ||||
Sbjct 370 TTGACATTGGGGTTGCCTCCTGATGGAGTCTTCGAACTTTTCACTAATCCACATAACGGA 429
Query 352 CC---CA-C--TCTTCTTC-GATATG--AA-CAAG-CA-----TG--GG-CG-T-CAAC- 389
|| || | | |||| || | | || |||| | || || || | | |
Sbjct 430 CCAAACACCGAACCACTTCTGAAAAGCAAATCAAGAAAGGTTTTGAAGGACGATGGACCG 489
Query 390 -TTCTGATCGTGAAGGTGGAGCAACCTGTGGCATGGGACTTCCTTTGGTGGTCTGGAGCT 448
| ||||| ||||||| || || ||||||| ||| ||||| | || ||||| |||
Sbjct 490 AGGCAGATCGCGAAGGTGAAGAAAGCTGTGGCCTGGAACTTCAGTGGGAGGTCTATTGCT 549
Query 449 ATCCCGAT-AGAACTAATTGTGGAAGAAAACCA-AACAGATCTTACAGCGAAATATAAAA 506
||||| || || |||||||| || ||||| || || |||||||||||||||||||||||
Sbjct 550 ATCCCCATAAG-TCTAATTGTCGATGAAAA-CAGAAGAGATCTTACAGCGAAATATAAAA 607
Query 507 AAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAGCTATAAAGTGGAGCCACTATATG 566
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 608 AAGAGAAAATGATGTTCATGAAAGTATTCGAGGGTAGCTATAAAGTGGAGCCTGTATACG 667
Query 567 TAGATTCAGTACGCTTGTGCAGGCACAATGA-GCCGAAGAGTCCGCA-A-GAATACAA-A 622
|||||||||||||||| |||| | |||| || |||||||||| | | | |||||||| |
Sbjct 668 TAGATTCAGTACGCTTATGCAAGAACAA-GAAGCCGAAGAGT--GTAGATGAATACAAGA 724
Query 623 ATATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGACCAATACTTTCAG 682
| |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 725 A-ATGTAGTGGCGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAATATTTTCAG 783
Query 683 CCATATCCTCCTTTTAATTTACCGCCATTTTCTTGGTTCATCCGTGATATCAC 735
|||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 784 CCATATCCTCCTTTTAATCTACCGCCATTTTCTTGGTTCATTCGTGATATCAC 836
> AT1G23620.1 | Symbols: | pseudogene, hypothetical protein |
chr1:8364662-8366449 REVERSE LENGTH=1788
Length=1788
Score = 449 bits (243), Expect = 2e-125
Identities = 293/317 (92%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 491 ACA-GCGAAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAGCTATAA 549
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1390 ACAGGCAAAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAACTATAA 1449
Query 550 AGTGGAGCCACTATATGTAGATTCAGTACGCTTGTGCAGGCACAATGAGCCGAAGAGTCC 609
|||||||||||||||||||||||||||||||||||||| | || ||||| ||||||
Sbjct 1450 AGTGGAGCCACTATATGTAGATTCAGTACGCTTGTGCAATAATAAGGAGCCAAAGAGTTT 1509
Query 610 GCAAGAATACAAAATATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGA 669
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 TCAAGAATACAAAACATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGA 1569
Query 670 CCAATACTTTCAGCCATATCCTCCTTTTAATT-TACCGCCATTTTCTTGGTTCATCCGTG 728
|||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 1570 CCAATACTTTCAGCCATATCCTCCTTTTAAATCTACCACCATTTTCTTGGTTCATCCGTG 1629
Query 729 ATATCACTATTAGGACCACCATAACTCTGCTAAAAATGCTTCAACATGCGAGTGTCGTGG 788
|||| || || |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1630 ATATAACCATCAGGACCACCATAACCCTGCTCAAAATGCTTCAACATGCGAGTGTCGTG- 1688
Query 789 TT-CGAGAATAAGTCTA 804
|| ||||| ||||||||
Sbjct 1689 TTGCGAGACTAAGTCTA 1705
Score = 239 bits (129), Expect = 4e-62
Identities = 139/144 (97%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 251 AAGTTGACAACAAAAAAGGGACTATGCCATATGAACATAGAACTGACATTGGGCTGGTAT 310
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 911 AAGGTGACAACAAAAAAGGGACTATGCCATATGAACATAGAACTGACATTAGGCTGGAAT 970
Query 311 CCTGATGGAGTCTTCGAACTTTTCACTAATCCAAATGACGGCCCACTCTTCTTCGATATG 370
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 971 CCTAATGGAGTCTTCGAACTTTTCACTAATCCAAATGATGGCCCACTCTTCTTCGATATG 1030
Query 371 AACAAGCATGGGCGTCAACTTCTG 394
||||||||||||||||||||||||
Sbjct 1031 AACAAGCATGGGCGTCAACTTCTG 1054
Score = 154 bits (83), Expect = 1e-36
Identities = 96/102 (94%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 394 GATCGTGAAGGTGGAGCAACCTGTGGCATGGGACTTCCTTTGGTGGTCTGGAGCTATCCC 453
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1181 GATCGTGAAGGTGGAGCAAGCTTTGGCATGGGACTTCCTTTGGTGGTCTGGAGCTATCCC 1240
Query 454 GATAGAACTAATTGTGGAAGAAAACCAAACAGA-TCTTACAG 494
|||||||||||||||||| |||||||||| ||| | ||||||
Sbjct 1241 GATAGAACTAATTGTGGATGAAAACCAAAAAGAAT-TTACAG 1281
Score = 134 bits (72), Expect = 2e-30
Identities = 83/88 (94%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 2 TTTGTGGACCAAAATTTGAGGGCAAAAATGAGGGTATTTTCTGGATTTGGTGGCTGGATA 61
|||||||||||||| || || || ||||||||||||||||||||||||| ||||||||||
Sbjct 44 TTTGTGGACCAAAACTTCAGAGC-AAAATGAGGGTATTTTCTGGATTTGATGGCTGGATA 102
Query 62 AATCAGAACATTCAAGAACCTCCTAAGG 89
||||||||||||||||||||||||||||
Sbjct 103 AATCAGAACATTCAAGAACCTCCTAAGG 130
> AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED
DURING: 4 anthesis, petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein
match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1);
Has 270 Blast hits to 130 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:8367170-8370280 REVERSE LENGTH=1275
Length=1275
Score = 183 bits (99), Expect = 2e-45
Identities = 144/165 (87%), Gaps = 6/165 (4%)
Strand=Plus/Plus
Query 414 CTGTGGCATGGGACTTCCTTTGGTGGTCTGGAGCTA-TCCCGATAGAA-CTAATTGTGGA 471
|||||||||||||||| || ||||||||||||| | | |||||| || |||||||| ||
Sbjct 293 CTGTGGCATGGGACTTTCTATGGTGGTCTGGAG-AATTTCCGATA-AATCTAATTGTCGA 350
Query 472 AGAAAACCAAACAGATCTTACAGCGAAATATAAAAAAGAGAAAATGATGTTCATGAAAGT 531
| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 351 TGTAAACAAAAAAGATCTTACAGCAAAATATAAAAAAGAGAAAATGATGTTCATGAAAGT 410
Query 532 ATTCGAAGGTAGCTATAA-AGTGGAGCCACTATATGTAGATTCAG 575
|||||||||| || || | | ||||||||||||||||||||||
Sbjct 411 TTTCGAAGGTAACTGGAAGA-TAGAGCCACTATATGTAGATTCAG 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5