BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921418 Length=819 Score E Sequences producing significant alignments: (Bits) Value AT1G23580.1 | Symbols: | Domain of unknown function DUF220 | c... 508 2e-143 AT1G23620.1 | Symbols: | pseudogene, hypothetical protein | ch... 449 2e-125 AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 183 2e-45 > AT1G23580.1 | Symbols: | Domain of unknown function DUF220 | chr1:8357446-8358805 REVERSE LENGTH=1002 Length=1002 Score = 508 bits (275), Expect = 2e-143 Identities = 618/773 (80%), Gaps = 66/773 (9%) Strand=Plus/Plus Query 12 AAAATTTG--AGGGCAAA-AATGAGG-GTATTTTCTG-GATTTGGTGGC-TGGATAAATC 65 |||||||| || | ||| |||| || |||||| ||| | ||||| || ||||| |||| Sbjct 81 AAAATTTGATAGAG-AAATAATG-GGTGTATTTCCTGCG-TTTGG-AGCATGGATCAATC 136 Query 66 AGAACAT-TCAAGAACCTCCTAAGGCTGAGT-CCAAAAGATCTGTGGATGTT-AATACTA 122 |||| | |||| | |||| | ||| || | |||| || |||| | ||||| ||| ||| Sbjct 137 AGAA-TTCTCAACAGCCTCTTGAGGAAGA-TCCCAAGAGCTCTGAGCATGTTGAAT-CTA 193 Query 123 ATTCAGTGTCAGAGAAAGAT-A--GTAATGATCAAGA--ACTACAT--TATGACAAAGAG 175 | || | ||||||| ||| | || || | |||| | | || |||||| |||| Sbjct 194 AGTCGGCATCAGAGATGGATAATGGTCCTGCT-AAGATGAAAAAATACTATGACGAAGAT 252 Query 176 GAGAT-GAAGAAACAAGGA-CAACTTTGGATAGATGCAGAGAAGAAGCAGCCATGGTATG 233 ||| | | ||| ||| || ||||||||| || ||||||||||||||| |||||| | | Sbjct 253 GAG-TGGGAGAGGCAA-GATAAACTTTGGACAGCTGCAGAGAAGAAGCATCCATGGAAAG 310 Query 234 ATGCCCCTCCTAAGGTTAAGTTGACAACAAAAAAGGG-ACTATGCCATATGAACATAGAA 292 |||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||| Sbjct 311 ATGCCCCTCCTAAGGTTAAGGTGACAACAAAAAAGGGTA-TATGCCATATGCACATAGAA 369 Query 293 CTGACATTGGGCTGGTATCCTGATGGAGTCTTCGAACTTTTCACTAATCCAAATGACGG- 351 |||||||||| | | |||||||||||||||||||||||||||||||||| || |||| Sbjct 370 TTGACATTGGGGTTGCCTCCTGATGGAGTCTTCGAACTTTTCACTAATCCACATAACGGA 429 Query 352 CC---CA-C--TCTTCTTC-GATATG--AA-CAAG-CA-----TG--GG-CG-T-CAAC- 389 || || | | |||| || | | || |||| | || || || | | | Sbjct 430 CCAAACACCGAACCACTTCTGAAAAGCAAATCAAGAAAGGTTTTGAAGGACGATGGACCG 489 Query 390 -TTCTGATCGTGAAGGTGGAGCAACCTGTGGCATGGGACTTCCTTTGGTGGTCTGGAGCT 448 | ||||| ||||||| || || ||||||| ||| ||||| | || ||||| ||| Sbjct 490 AGGCAGATCGCGAAGGTGAAGAAAGCTGTGGCCTGGAACTTCAGTGGGAGGTCTATTGCT 549 Query 449 ATCCCGAT-AGAACTAATTGTGGAAGAAAACCA-AACAGATCTTACAGCGAAATATAAAA 506 ||||| || || |||||||| || ||||| || || ||||||||||||||||||||||| Sbjct 550 ATCCCCATAAG-TCTAATTGTCGATGAAAA-CAGAAGAGATCTTACAGCGAAATATAAAA 607 Query 507 AAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAGCTATAAAGTGGAGCCACTATATG 566 ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | Sbjct 608 AAGAGAAAATGATGTTCATGAAAGTATTCGAGGGTAGCTATAAAGTGGAGCCTGTATACG 667 Query 567 TAGATTCAGTACGCTTGTGCAGGCACAATGA-GCCGAAGAGTCCGCA-A-GAATACAA-A 622 |||||||||||||||| |||| | |||| || |||||||||| | | | |||||||| | Sbjct 668 TAGATTCAGTACGCTTATGCAAGAACAA-GAAGCCGAAGAGT--GTAGATGAATACAAGA 724 Query 623 ATATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGACCAATACTTTCAG 682 | |||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct 725 A-ATGTAGTGGCGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAATATTTTCAG 783 Query 683 CCATATCCTCCTTTTAATTTACCGCCATTTTCTTGGTTCATCCGTGATATCAC 735 |||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 784 CCATATCCTCCTTTTAATCTACCGCCATTTTCTTGGTTCATTCGTGATATCAC 836 > AT1G23620.1 | Symbols: | pseudogene, hypothetical protein | chr1:8364662-8366449 REVERSE LENGTH=1788 Length=1788 Score = 449 bits (243), Expect = 2e-125 Identities = 293/317 (92%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 491 ACA-GCGAAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAGCTATAA 549 ||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1390 ACAGGCAAAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAACTATAA 1449 Query 550 AGTGGAGCCACTATATGTAGATTCAGTACGCTTGTGCAGGCACAATGAGCCGAAGAGTCC 609 |||||||||||||||||||||||||||||||||||||| | || ||||| |||||| Sbjct 1450 AGTGGAGCCACTATATGTAGATTCAGTACGCTTGTGCAATAATAAGGAGCCAAAGAGTTT 1509 Query 610 GCAAGAATACAAAATATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGA 669 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1510 TCAAGAATACAAAACATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGA 1569 Query 670 CCAATACTTTCAGCCATATCCTCCTTTTAATT-TACCGCCATTTTCTTGGTTCATCCGTG 728 |||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| Sbjct 1570 CCAATACTTTCAGCCATATCCTCCTTTTAAATCTACCACCATTTTCTTGGTTCATCCGTG 1629 Query 729 ATATCACTATTAGGACCACCATAACTCTGCTAAAAATGCTTCAACATGCGAGTGTCGTGG 788 |||| || || |||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1630 ATATAACCATCAGGACCACCATAACCCTGCTCAAAATGCTTCAACATGCGAGTGTCGTG- 1688 Query 789 TT-CGAGAATAAGTCTA 804 || ||||| |||||||| Sbjct 1689 TTGCGAGACTAAGTCTA 1705 Score = 239 bits (129), Expect = 4e-62 Identities = 139/144 (97%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 251 AAGTTGACAACAAAAAAGGGACTATGCCATATGAACATAGAACTGACATTGGGCTGGTAT 310 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 911 AAGGTGACAACAAAAAAGGGACTATGCCATATGAACATAGAACTGACATTAGGCTGGAAT 970 Query 311 CCTGATGGAGTCTTCGAACTTTTCACTAATCCAAATGACGGCCCACTCTTCTTCGATATG 370 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 971 CCTAATGGAGTCTTCGAACTTTTCACTAATCCAAATGATGGCCCACTCTTCTTCGATATG 1030 Query 371 AACAAGCATGGGCGTCAACTTCTG 394 |||||||||||||||||||||||| Sbjct 1031 AACAAGCATGGGCGTCAACTTCTG 1054 Score = 154 bits (83), Expect = 1e-36 Identities = 96/102 (94%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 394 GATCGTGAAGGTGGAGCAACCTGTGGCATGGGACTTCCTTTGGTGGTCTGGAGCTATCCC 453 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1181 GATCGTGAAGGTGGAGCAAGCTTTGGCATGGGACTTCCTTTGGTGGTCTGGAGCTATCCC 1240 Query 454 GATAGAACTAATTGTGGAAGAAAACCAAACAGA-TCTTACAG 494 |||||||||||||||||| |||||||||| ||| | |||||| Sbjct 1241 GATAGAACTAATTGTGGATGAAAACCAAAAAGAAT-TTACAG 1281 Score = 134 bits (72), Expect = 2e-30 Identities = 83/88 (94%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 2 TTTGTGGACCAAAATTTGAGGGCAAAAATGAGGGTATTTTCTGGATTTGGTGGCTGGATA 61 |||||||||||||| || || || ||||||||||||||||||||||||| |||||||||| Sbjct 44 TTTGTGGACCAAAACTTCAGAGC-AAAATGAGGGTATTTTCTGGATTTGATGGCTGGATA 102 Query 62 AATCAGAACATTCAAGAACCTCCTAAGG 89 |||||||||||||||||||||||||||| Sbjct 103 AATCAGAACATTCAAGAACCTCCTAAGG 130 > AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8367170-8370280 REVERSE LENGTH=1275 Length=1275 Score = 183 bits (99), Expect = 2e-45 Identities = 144/165 (87%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 414 CTGTGGCATGGGACTTCCTTTGGTGGTCTGGAGCTA-TCCCGATAGAA-CTAATTGTGGA 471 |||||||||||||||| || ||||||||||||| | | |||||| || |||||||| || Sbjct 293 CTGTGGCATGGGACTTTCTATGGTGGTCTGGAG-AATTTCCGATA-AATCTAATTGTCGA 350 Query 472 AGAAAACCAAACAGATCTTACAGCGAAATATAAAAAAGAGAAAATGATGTTCATGAAAGT 531 | |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 351 TGTAAACAAAAAAGATCTTACAGCAAAATATAAAAAAGAGAAAATGATGTTCATGAAAGT 410 Query 532 ATTCGAAGGTAGCTATAA-AGTGGAGCCACTATATGTAGATTCAG 575 |||||||||| || || | | |||||||||||||||||||||| Sbjct 411 TTTCGAAGGTAACTGGAAGA-TAGAGCCACTATATGTAGATTCAG 454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39885912718 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5