BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921422

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23680.1 | Symbols:  | Domain of unknown function (DUF220) |...   231    6e-60
  AT1G23610.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   198    6e-50
  AT2G27670.1 | Symbols:  | Domain of unknown function DUF220 | c...   193    3e-48
  AT1G23570.2 | Symbols:  | Domain of unknown function (DUF220) |...   148    6e-35


> AT1G23680.1 | Symbols:  | Domain of unknown function (DUF220) 
| chr1:8376687-8377156 REVERSE LENGTH=399
Length=399

 Score =  231 bits (125),  Expect = 6e-60
 Identities = 137/143 (96%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  400  GAAAACAAATCAAGAAAACTTTTGCTGAAGGATGGACCGAGGCGGATTGCGGAGGTAGAG  459
            |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  158  GAAAGCAAATCAAGAAAACTTTTGATGAAGGATGGACCGAGGCGGATTGCGGAGGTAGAG  217

Query  460  AAAGTTGTATCCTGGAAATTCCTTTGGTTCTCTGGAGCTCTCCCAATAAGTCTAATTGTC  519
            ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct  218  AAAGTTGTATCCTGGAAATTCCTTTTGTTTTCTGGAGCTCTCCCAACAAGTCTAATTGTC  277

Query  520  GAAGACAACCAAAAATATCTTAC  542
            ||||||||||||||| |||||||
Sbjct  278  GAAGACAACCAAAAAGATCTTAC  300


> AT1G23610.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G23640.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr1:8362864-8363675 REVERSE LENGTH=667
Length=667

 Score =  198 bits (107),  Expect = 6e-50
 Identities = 185/222 (83%), Gaps = 7/222 (3%)
 Strand=Plus/Plus

Query  549  GAGGGTAGCTGGAAAGTGGAGCCACTTTTCATAGATTCA-GAACGCTTGTGCAAG-CAAA  606
            ||||||||||||||||| |||||||| | | |||| ||| |||||||| |||| | | | 
Sbjct  338  GAGGGTAGCTGGAAAGTCGAGCCACTATACGTAGA-TCAGGAACGCTTTTGCAGGTCTAG  396

Query  607  TTAAGCCCAAGAGTCGAGAAGAGTACAAAAAATGTAGTGGGGGACGAGGAAGGATTGCAT  666
             |  |   || |||| ||||||||||||||||||||| || ||||||||||| |||||||
Sbjct  397  GT-CGGTGAATAGTCAAGAAGAGTACAAAAAATGTAGCGGCGGACGAGGAAGAATTGCAT  455

Query  667  CAAAGGTGACAATGGAGCAGATCTTTCAGCCTTCTTTTCC-TCTTAATCTTCCTCCCTTT  725
            | | ||||||||||||||  |||||| ||||||| |  || ||||||||| || ||  ||
Sbjct  456  CGATGGTGACAATGGAGCTTATCTTTTAGCCTTC-TACCCTTCTTAATCTGCCACCGGTT  514

Query  726  TCTTGGATCATCCGTGGGATCACCATCAAAACCACCAAGAAT  767
            ||||||||||||||||||||||||||||||| |||||| |||
Sbjct  515  TCTTGGATCATCCGTGGGATCACCATCAAAATCACCAA-AAT  555


> AT2G27670.1 | Symbols:  | Domain of unknown function DUF220 | 
chr2:11801568-11802891 REVERSE LENGTH=882
Length=882

 Score =  193 bits (104),  Expect = 3e-48
 Identities = 189/230 (82%), Gaps = 6/230 (3%)
 Strand=Plus/Plus

Query  549  GAGGGTAGCTGGAAAGTGGAGCCACTTTTCATAGATTCA-GAACGCTTGTGCAAG-CAAA  606
            |||||||| ||||||||||||||||| | |  ||| ||| |||||||| |||||| | | 
Sbjct  604  GAGGGTAGATGGAAAGTGGAGCCACTATACGCAGA-TCAGGAACGCTTATGCAAGTCTAG  662

Query  607  TTAAGCCCAAGAGTCG-AGAAGAGTACAAAAAATGTAGTGGGGGACGAGGAAGGATTGCA  665
             |  ||  |  | | | |||||||||||||||||||||||  |||  ||||||||||| |
Sbjct  663  GT-CGCGGATTAAT-GAAGAAGAGTACAAAAAATGTAGTGACGGAAAAGGAAGGATTGGA  720

Query  666  TCAAAGGTGACAATGGAGCAGATCTTTCAGCCTTCTTTTCCTCTTAATCTTCCTCCCTTT  725
            |||||||||||||||||||||||||||||||||| || || ||||||| | || ||  ||
Sbjct  721  TCAAAGGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTTAATGTGCCACCGATT  780

Query  726  TCTTGGATCATCCGTGGGATCACCATCAAAACCACCAAGAATCTACTCGA  775
            |||||| ||||||||| ||||||||||||||| |  |||||| | |||||
Sbjct  781  TCTTGGTTCATCCGTGAGATCACCATCAAAACAATAAAGAATTTGCTCGA  830


> AT1G23570.2 | Symbols:  | Domain of unknown function (DUF220) 
| chr1:8354806-8356364 REVERSE LENGTH=1067
Length=1067

 Score =  148 bits (80),  Expect = 6e-35
 Identities = 180/226 (80%), Gaps = 16/226 (7%)
 Strand=Plus/Plus

Query  546  TTCGAGGGTAGCTGGAAAGTGGAGCCACT-TTTCATAGATTCAGAACGCTTGTGCAAGCA  604
            ||||| |||||||  | |||||||||||| | |  ||||||||||||||||||||||  |
Sbjct  421  TTCGAAGGTAGCTATAGAGTGGAGCCACTATAT-GTAGATTCAGAACGCTTGTGCAA-TA  478

Query  605  A-ATTAAGCCCAAGAGT-CGAGAAGAGTACAAAAAATGTAGTGGGGGACGAGGAAGGATT  662
            | ||  |||| |||||| || | ||| ||||||| |||||| || |||| ||||||||||
Sbjct  479  ACATGGAGCCGAAGAGTCCG-GCAGAATACAAAAGATGTAGCGGTGGACAAGGAAGGATT  537

Query  663  GCATCAAAGGTGACAATGGAGCAGAT-CTTTCAGCCTTCTTTTCCTCTTAATCTTCCTCC  721
            |||||||||||||||||| | || || |||| |||| | |  |||| ||||||| || ||
Sbjct  538  GCATCAAAGGTGACAATGAACCA-ATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC  596

Query  722  -CTTTTCTTGG-ATCATCCGTG-GGATCACCATCAA-AACCACCAA  763
             || | ||||| | ||| ||   || |||||||||| ||| |||||
Sbjct  597  ACTAT-CTTGGTA-CATTCGAAAGG-TCACCATCAAGAAC-ACCAA  638



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39333337101


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5