BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921424
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23700.1 | Symbols: | Protein kinase superfamily protein | ... 693 0.0
> AT1G23700.1 | Symbols: | Protein kinase superfamily protein
| chr1:8379454-8381965 REVERSE LENGTH=1422
Length=1422
Score = 693 bits (375), Expect = 0.0
Identities = 537/610 (88%), Gaps = 32/610 (5%)
Strand=Plus/Plus
Query 476 GTGTGGAAAGGATGCCTACTTGTTCTGGGAATACTTTTGTTGGAACTCCATGCTGGATCG 535
||||||||||||||| |||| |||||| ||||||||||||||||| |||| || |||| |
Sbjct 488 GTGTGGAAAGGATGCGTACTAGTTCTGAGAATACTTTTGTTGGAAATCCACGCCGGATGG 547
Query 536 CACCTGAGGAGGATACGCAGCAAGTTGATGGCTATGATTTCAAATTGGATATCTGGTCGT 595
|||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 548 CACCTGAGAAGGATATGCAGCAAGTTGATGGCTATGATTTCAAAGTGGATATCTGGTCGT 607
Query 596 TTGGCATGACTGCCCTGGAACTTGCCCATGGTCATTCCCCATTTTCAAAATATCCACATA 655
|||||||||||||||||||||||||||||||||||| || | || | | |
Sbjct 608 TTGGCATGACTGCCCTGGAACTTGCCCATGGTCATT---CA----C---CTA--C-C--A 652
Query 656 CGGTGGTGCTACCATTGACCTTACAAAATTCT-CCTTGTCCTGACTATGAAGAAGATAAT 714
| |||||||||||||| ||||||||||||| |||| |||| ||||||||||||| |
Sbjct 653 C---GGTGCTACCATTGAACTTACAAAATTCTCCCTT-TCCTAACTATGAAGAAGACACG 708
Query 715 AAATTCTCTAAGTCTTTTAGAGAGTTGGTCGCAGCTTGCTTGATAAAAGATTTAGAAAAA 774
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 709 AAATTCTCTAAGTCTTTTAGAGAGTTGGTCGCAGCTTGCTTGATAGAAGATCCAGAAAAA 768
Query 775 CGTCCGACCGCTTCAAAACTACTGGAATATCCATTCTTACAGCATACTCTTTCTACTGAA 834
||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 769 CGTCCGACCGCTTCACAACTACTGGAATATCCGTTCTTACAGCAAACTCTTTCTACTGAA 828
Query 835 TACTTGGCTAGTACGATT-CTTGATAGCCTCTAC-CCGCTTGGTGAGCGTTTTAGAAAGC 892
|||||||||||||| ||| |||||| |||||| | |||||||||||||||| ||||||||
Sbjct 829 TACTTGGCTAGTAC-ATTTCTTGATGGCCTCT-CTCCGCTTGGTGAGCGTTATAGAAAGC 886
Query 893 TGAAGGAGGAAGAGGCCAAGTTGGTTAAACGTATAGATGGTAACA-GTGAGAAATTATCT 951
||||||||||| ||||||||||||||||| || |||||||||||| | |||||| |||||
Sbjct 887 TGAAGGAGGAAAAGGCCAAGTTGGTTAAAGGTGTAGATGGTAACAAG-GAGAAAGTATCT 945
Query 952 CAGGTAACCATTGAAGGGCTGCTGACCTTTGGGAAACCTGCTAGTCCTGTGAACCCTGTT 1011
|||| || |||||| |||||||| | || || |||||||||| |||||||||||||
Sbjct 946 CAGGAAAATGTTGAAGCGCTGCTGA--T--GG-AA-CCTGCTAGTCTTGTGAACCCTGTT 999
Query 1012 TCTTGCAATGCTGCTCAAATCCTCCCAATGTTACAGAATCTCCTGATCCAGAATGATATC 1071
||||| || |||||||| |||||||||| ||||||||| |||||||||| |||||||||
Sbjct 1000 TCTTGTGATACTGCTCAAGTCCTCCCAATCTTACAGAATATCCTGATCCAAAATGATATC 1059
Query 1072 CAAAGGGAAA 1081
||||||||||
Sbjct 1060 CAAAGGGAAA 1069
Score = 645 bits (349), Expect = 0.0
Identities = 423/459 (92%), Gaps = 4/459 (1%)
Strand=Plus/Plus
Query 22 ATGACGAGCTCATCGGGAACAAAATTTCCTCTGGATGCGAAAGATTACGAGCTTTTAG-A 80
|||||||| ||| ||| ||| | ||||||||||| |||||||||||||||| |||||| |
Sbjct 1 ATGACGAGTTCACCGGAAACGAGATTTCCTCTGGTTGCGAAAGATTACGAGATTTTAGAA 60
Query 81 GAGGATTGGCGATGGTGTTTACAGAGCTCGATGCATTCTACTTGATGAGATTGTGGCCAT 140
|| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 61 GA-GATAGGCGATGGTGTTTACAGAGCTCGATGCATTCTACTTGATGAAATTGTAGCCAT 119
Query 141 CAAGATCTGGAACCTTGAAAAATGCACTAAAGATTTGGAAACCATAAAGAAAGAAGTTCA 200
||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||||
Sbjct 120 CAAGATCTGGAACCTTGAAAAATGCACCAACGATCTGGAAACCATAAGGAAAGAAGTTCA 179
Query 201 TAGATTGAGCTCAATTGATCATCCAAATCTATTGA-GGTCGCATTGCTCTTTCATAGATG 259
||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 180 TAGATTGAGCTTAATTGATCATCCAAATCTATTGAGGGT-GCATTGCTCTTTCATAGATA 238
Query 260 GTACCAGCTTGTGGATTGTGATGCCTTACATGTCGTGTGGCTCCTGCTTGAACATAATGA 319
||| ||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||
Sbjct 239 GTAGCAGCTTGTGGATTGTGATGCCTTTTATGTCGTGCGGCTCTTCCTTGAACATAATGA 298
Query 320 AATCAGTCTATCCAAATGGTCTTGAGGAGCCTGTAGTTGCTATATTTTTGCGGGAGATTC 379
|||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 299 AATCAGTCTATCCAAATGGTCTTGAGGAACCTGTAATTGCTATATTGTTGCGGGAGATTC 358
Query 380 TAAAAGCTCTTGTTTACCTTCATGGACTAGGATACATCCATGGAAATGTTAAGGCCGGGA 439
| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 359 TTAAAGCTCTTGTTTACCTTCATGGACTAGGACACATCCATCGAAATGTTAAGGCTGGGA 418
Query 440 ATATACTGGTAGACTCAGAAGGAACTGTTAAGCTTGGTG 478
|| ||||||| ||||||||||||||||||||||| ||||
Sbjct 419 ATGTACTGGTTGACTCAGAAGGAACTGTTAAGCTCGGTG 457
Score = 268 bits (145), Expect = 7e-71
Identities = 185/204 (91%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 986 AACCTGCTAGTCCTGTGAACCCTGTTTCTTGCAATGCTGCTCAAATCCTCCCAAT-GTTA 1044
||||||||| || |||||||||||||||||| || |||||||| |||||||||| | ||
Sbjct 1091 AACCTGCTATTCTTGTGAACCCTGTTTCTTGTGATACTGCTCAAGTCCTCCCAATCG-TA 1149
Query 1045 CAGAATCTCCTGATCCAGAATGATATCCAAAGGGAAAGGTTAATCAGTTTAATGCAACTC 1104
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1150 CAGAATATCCTGATCCAGAATGATATCCAAAGGAAAAGGTTAATCGGTTTAATGCAACTC 1209
Query 1105 TATGATCCAACTGCTGGTAAGTTTGCTGTTCTGTCGGC-AGATTTTGCATCTTCTCTGTG 1163
| |||||||||||||||||||||||||||||| || | ||| |||||||||||||| ||
Sbjct 1210 TGTGATCCAACTGCTGGTAAGTTTGCTGTTCTATCA-CTAGAATTTGCATCTTCTCTATG 1268
Query 1164 TTACAAGTTCCGTGACCTGATCTT 1187
||||||||||| ||||||||||||
Sbjct 1269 TTACAAGTTCCATGACCTGATCTT 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5