BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921434
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23780.1 | Symbols: | F-box family protein | chr1:8406686-8... 1969 0.0
AT1G23770.1 | Symbols: | F-box family protein | chr1:8405214-8... 802 0.0
> AT1G23780.1 | Symbols: | F-box family protein | chr1:8406686-8408525
REVERSE LENGTH=1840
Length=1840
Score = 1969 bits (1066), Expect = 0.0
Identities = 1333/1460 (91%), Gaps = 25/1460 (2%)
Strand=Plus/Plus
Query 309 CCGAGAATGAAGCTGCGGTTGAGACATCACGAGACGAGAGAAACCCTAAAACTTGAATTG 368
|||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 CCGATAATGAAGCTACGATTGAGACATCACGAGACGAGAGAAACCCTAAAACTTGAATTG 99
Query 369 ACCGATACAGACACTCTCCATGATCTCCGGCGACGGATCAACCCCACGGCGCCTTCCTCC 428
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 100 GCCGATGCAGACACTCTCCATGATCTCCGGCGACGGATCAACCCCACGGTGCCTTCCTCC 159
Query 429 GTTCATCTATCACTTAATCGTAAAGACGAGCTCGTCACGCCTTCTCCGGAGGATACGCTC 488
|||||||| || || |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 160 GTTCATCTCTCGCTCAATCGTAAAGACGAGCTCATCACGCCTTCGCCGGAGGATACGCTC 219
Query 489 CGATCTCTTGGTTTAATATCCGGTGACCTAATTTACTACTCTCTCGAGGCTGGCGAATCT 548
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 220 CGATCTCTTGGTTTAATATCCGGTGACCTAATTTACTTCTCTCTCGAGGCTGGCGAATCT 279
Query 549 TCGGGTTGGGAATTGAGAGATTATGAAACCCTAGCTCCTCAATCGGAGAGTAATCAGGCG 608
||| |||| |||||||||||| ||||||| ||||| |||||||||||||||||||| ||
Sbjct 280 TCGAATTGGAAATTGAGAGATTCTGAAACCGTAGCTTCTCAATCGGAGAGTAATCAGACG 339
Query 609 ATTGTTCATGAATCCATGGGTATTGGATTCGCAGAGGTTGA---T-T--CTAATC---CG 659
| |||||||| || | | ||||| |||||||||||||| | | | ||| ||
Sbjct 340 AGTGTTCATG-AT---T-CG-ATTGGGTTCGCAGAGGTTGATGTTGTCCCCGATCAAGCG 393
Query 660 AATTC-CGGCGTAGA-AGATCCAGCGGAAGGATCCAAG-GGGGGA-AATTCAGGTATGGA 715
|| || | || | | ||| | ||| ||||| || ||| || | ||| ||||||||
Sbjct 394 AAATCTAATCCTA-ATACCTCC-GTAGAA-GATCC-AGAGGGAGATATTTCGGGTATGGA 449
Query 716 GGATCCAGAGCCGATGGATGTTGAGCAGCTTGACATGGAGCTCGCTGCCGCCGGAAGCAA 775
|| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 450 GGGTCCAGAGCCGATGGATGTTGAGCAGCTTGACATGGAGCTCGCTGCAGCTGGAAGCAA 509
Query 776 AAGGTTAAGTGAACCATTCTTCTTGAAAAATGTATTGCTTGAGAAATCTGGTGATACTAG 835
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 510 AAGGCTAAGTGAACCATTCTTCTTGAAAAATATACTGCTTGAGAAATCTGGTGATACTAG 569
Query 836 TGAATTGACTACTTTGGCTTTGTCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTT 895
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 570 TGAGTTGACTACTTTGGCTTTGTCAGTACATGCTGTTATGTTAGAATCTGGATTCGTGCT 629
Query 896 GTTCGATTC-TGGCTCTGATAGGTTTAACTTTTCAAAGGAGTTACTTACTGTATCCTTAA 954
||| || || ||||||||| | ||||||||||||||||||||||||||| |||||| | |
Sbjct 630 GTT-GAATCATGGCTCTGACAAGTTTAACTTTTCAAAGGAGTTACTTACAGTATCCCTGA 688
Query 955 GGTATACTCTACCTGAGCTAATTAAGTCTGAGGATACCAATACGATCGAGTCAGTTACTG 1014
||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||| |||
Sbjct 689 GGTATACTCTACCTGAGCTGATTAAGTCTAAGGATACAAATACAATCGAGTCAGTTTCTG 748
Query 1015 TGAAGTTTCAGAACTTAGGCCCTGTGGTTGTAGTTTACGGAACTGTAGGTGGGTCTAGTG 1074
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 749 TGAAGTTTCAGAATTTAGGCCCTGTGGTTGTAGTTTACGGAACTGTAGGTGGATCTAGTG 808
Query 1075 GGCGAGTGCATATGAATCTTGAAAAGCGTAGGTTTGTGCCCGTTATCGATTTGGTTATGG 1134
|||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct 809 GGCGAGTGCATATGAATCTTGATAAGCGTAGGTTTGTTCCTGTTATCGACTTGGTTATGG 868
Query 1135 ATACTTCGAAATCTGACGAAGAAGGCTCTTCGAGCATCTATCGTGAAGTGTTCATGTTCT 1194
||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 869 ATACTTCTACATCTGACGAAGAAGGCTCTTCGAGTATCTACCGTGAAGTGTTCATGTTCT 928
Query 1195 GGAGAATGGTAAAAGATTGTCTTGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTG 1254
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GGAGAATGGTAAAAGATCGCCTTGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTG 988
Query 1255 GCTTGGAACCTCCACCTTGTCTGATGCGCCTACCGTCAGAACTAAAGCTGAAGATACTAG 1314
|||||||||||||||| ||| |||||||| |||| |||| |||||||||||||||||||
Sbjct 989 GCTTGGAACCTCCACCGTGTTTGATGCGCTTACCAACAGAGCTAAAGCTGAAGATACTAG 1048
Query 1315 AGTTGCTTCCTGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGAAATGAGGTATC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1049 AGTTGCTTCCTGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGAAATGCGGTATC 1108
Query 1375 TTGCATCAGACAATGATTTGTGGAAACAGAAATGCTTGGAAGAAGTTGATAATTTTGCTG 1434
| |||||||||||||| |||||||| ||||| |||||||| |||||| ||||||||| ||
Sbjct 1109 TGGCATCAGACAATGACTTGTGGAAGCAGAAGTGCTTGGAGGAAGTTAATAATTTTGTTG 1168
Query 1435 TCACAGAAGCGGGTGATTCAGTTAATTGGAAGGCGAGATTTGCTACTTTTTGGAGGCAAA 1494
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1169 TGACAGAAGCGGGTGATTCAGTTAATTGGAAGGCGAGGTTTGCTACTTTTTGGAGGCAAA 1228
Query 1495 AACAGCTTGCTACTGCTAGTGCTACTTTTTGGAGGCAAAACCAGCTTGGAAGACGGAACA 1554
||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1229 AACAGCTTGCTGCTGCTAGTGATACTTTTTGGAGGCAAAACCAGCTTGGAAGGCGGAACA 1288
Query 1555 TTTCCATGGGAAGAAGCACCATACGATTCCCTCGAATCATCGGAGACCCCCCTTTCACAT 1614
|||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1289 TTTCCACGGGAAGAAGCGGCATACGATTCCCTCGAATCATTGGAGACCCTCCTTTCACAT 1348
Query 1615 GGTTTAATGGGGATCGCATGCATGGATCCATTGGTATTCACCCGGGACAACCGGCACGTG 1674
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1349 GGTTTAATGGGGATCGCATGCATGGATCCATTGGTATTCACCCGGGACAATCAGCACGTG 1408
Query 1675 GGCTTGGCGGACGAACTTGGGGACAGCAGTTTACTCCCAGATGCAACCTTGGGGGACTAA 1734
|||| ||| ||||||| |||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1409 GGCTCGGCAGACGAACATGGGGACAGCTCTTTACTCCCAGATGCAATCTTGGGGGACTCA 1468
Query 1735 ACTAGCAAACATACCGGGTG 1754
|||||||||||||||| |||
Sbjct 1469 ACTAGCAAACATACCGAGTG 1488
> AT1G23770.1 | Symbols: | F-box family protein | chr1:8405214-8406266
REVERSE LENGTH=1053
Length=1053
Score = 802 bits (434), Expect = 0.0
Identities = 654/755 (87%), Gaps = 36/755 (5%)
Strand=Plus/Plus
Query 677 TCCA-GCGGAAGGATCCAAGGGGGGAAATTCAGGTATGGAGGATCCAGAGCCGATGGATG 735
|||| || |||||||||||| |||||||||| ||||| |||| ||||| ||| | |
Sbjct 39 TCCAGGC-GAAGGATCCAAGAGGGGAAATTCGGGTATAGAGGGTCCAGTGCC-A---A-- 91
Query 736 TTGAGCAGCTTGACATGGAGCTCGCTGCCGCCGGAAGCAAAAGGTTAAGTGAACCATTCT 795
|| | | || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 92 -TG-G-A---TG---TGGAGCTCGCTGCCGCTAAAAGCAAAAGGTTAAGTGAACCATTCT 142
Query 796 TCTTGAAAAATGTATTGCTTGAGAAATCTGGTGATACTAGTGAATTGACTACTTTGGCTT 855
| ||||||||||||||||||||||||||||| ||||| ||||| |||||| |||||||||
Sbjct 143 TTTTGAAAAATGTATTGCTTGAGAAATCTGGCGATACCAGTGACTTGACTGCTTTGGCTT 202
Query 856 TGTCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTCGATTC-TGGCTCTGAT 914
| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 203 TATCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTGGA-TCATGGCTCTGAT 261
Query 915 AGGTTTAACTTTTCAAAGGAGTTACTTACTGTATCCT-TAAGGTATACTCTACCTGAGCT 973
| ||||| |||||||||| |||||||| |||||| || ||||||||||||| ||||||||
Sbjct 262 AAGTTTAGCTTTTCAAAGAAGTTACTTTCTGTAT-CTCTAAGGTATACTCTGCCTGAGCT 320
Query 974 AATTAAGTC-TGAGGATACCAATACGA-TCGAGTCAGTTACTGTGAAGTTTCAGAACTTA 1031
|||| | | | ||||||| ||||| | |||||||||||||||||| |||||||||| ||
Sbjct 321 AATT-ACACGTAAGGATACTAATAC-AGTCGAGTCAGTTACTGTGAGGTTTCAGAACATA 378
Query 1032 GGCCCTGTGG-TTGTAGTTTACGGAACTGTAGGTGGGTCTAGTGGGCGAGTGCATATGA- 1089
|||||| || ||||||||||||||||| ||||||||||| || ||||||||| ||||
Sbjct 379 GGCCCT-AGGCTTGTAGTTTACGGAACTCTAGGTGGGTCTTGTAAGCGAGTGCACATGAC 437
Query 1090 --ATCTTGAAAAGCGTAGGTTTGTGCCCGTTATCGATTTGGTTATGGATACTTCGAAATC 1147
|||||| ||| |||||||| |||| ||||| ||||||||| ||||||||| ||| |
Sbjct 438 TTCTCTTGATAAGAGTAGGTTTTTGCCTGTTATTGATTTGGTTGTGGATACTTTGAAGTT 497
Query 1148 TGACGAAG-AAGGCTCTTCGAGCAT-CTATCGTGAAGTGTTCATGTTCTGGAGAATGGTA 1205
||| |||| | |||||||| ||| | ||| || |||||||||||||| ||||||||||||
Sbjct 498 TGA-GAAGCAGGGCTCTTCTAGC-TACTACCGGGAAGTGTTCATGTTGTGGAGAATGGTA 555
Query 1206 AAAGATTG-TCTTGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTGGCTTGGAACC 1264
||||| || |||||||| ||||||||||||||| |||| ||||| |||||||||||| |
Sbjct 556 AAAGA-TGAACTTGTTATACCGTTGTTGATTGGTCTTTGTGATAAGGCTGGCTTGGAATC 614
Query 1265 TCCACCTTGTCTGATGCGCCTACCGTCAGAACTAAAGCTGAAGATACTAGAGTTGCTTCC 1324
|||||||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 615 TCCACCTTGTTTGATGCTCCTACCGACAGAGCTAAAGCTGAAGATACTAGAGTTGCTTCC 674
Query 1325 TGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGAAATGAGGTATCTTGCATCAGA 1384
|||||||||||||||| |||||||||||||||||||||| ||| ||||||| || |||||
Sbjct 675 TGGTGTGAGTATTGGATATATGGCTTGTGTTTGTACAGAGATGCGGTATCTGGCTTCAGA 734
Query 1385 CAATGATTTGTGGAAACAGAAATGCTTGGAAGAAG 1419
|||||||||||| |||| ||||||||||||||||
Sbjct 735 TAATGATTTGTGGGAACATAAATGCTTGGAAGAAG 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86997544485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5