BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921435

Length=610
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa...   453    9e-127


> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) 
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116

 Score =  453 bits (245),  Expect = 9e-127
 Identities = 481/583 (83%), Gaps = 63/583 (11%)
 Strand=Plus/Plus

Query  1     CTCGAATCCCAAAAGTTCAGTAGATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACA  60
             |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct  1194  CTCGAATCCCAAAAGTTCAGCAGATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCA  1253

Query  61    AAGGAACTAACCCTGATGAGGTTTTGGCCTAT-ACAACCGCCGTCCAAGGTGGAGTATTA  119
             |||| |||||||||||||||| | ||||||||  |  |||| ||||||||||||||||||
Sbjct  1254  AAGGGACTAACCCTGATGAGGCTGTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTA  1312

Query  120   AGTGGTGAAGGTGGAGAAGAAACGCaaaaaaaCCTAAATTTATTGAAAACAAATATTTTG  179
             ||||||||||||||||||||||| |||||     ||  ||  |  |   |   |     |
Sbjct  1313  AGTGGTGAAGGTGGAGAAGAAACACAAAA-----TA--TTC-T--A---C---T-----G  1351

Query  180   CTACTTGATGTTGCGCCTTTGCAC-CTCGGTATTGACCCTGTCGGAGGCGTGATGACAAA  238
             ||  | ||||||||||||||| |  |||||||||||  ||||||||||||||||||||||
Sbjct  1352  CT--T-GATGTTGCGCCTTTG-AGTCTCGGTATTGAAACTGTCGGAGGCGTGATGACAAA  1407

Query  239   CATTATTCCT-----C--GG--ATCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCA  289
             |||||||||      |  ||  ||||||||||||||||||||||||||||||||||||||
Sbjct  1408  CATTATTCCGAGGAACACGGTGATCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCA  1467

Query  290   AGATCAGCAAACTACTGTTACTATCAACGTCTATGAAG---AGATAAGCATGACGAAAGA  346
             |||||||||||||||||| |||||||||||||| ||||   ||| |||||||||||||||
Sbjct  1468  AGATCAGCAAACTACTGTGACTATCAACGTCTACGAAGGCGAGAGAAGCATGACGAAAGA  1527

Query  347   TAACCCCGAGCTCGGAAATTTCCAGCTCACCGGCCTTCTTCATGCACCTAGACGCAAGGA  406
             ||||| |||||| ||||| ||| | ||||| ||| |||||| |||||| ||  |   |||
Sbjct  1528  TAACCGCGAGCTTGGAAAATTCGATCTCACAGGCATTCTTCCTGCACCCAG--G---GGA  1582

Query  407   ACAGTTTTTCATGGGGGTGCCACAGATGGAGGTGACTTTCGAAGTGGACGCAAATGGGAT  466
                ||       |      |||||||| ||||||||||||||||||||||||||||||||
Sbjct  1583  ---GT-------G------CCACAGATTGAGGTGACTTTCGAAGTGGACGCAAATGGGAT  1626

Query  467   TCTGCAAGTGAACACC-GAAGACAAAGTTCCAAAGATGTCACAGTCAATTACAATAACGA  525
              ||||| ||||| | | |||||||||||| | |||| |||||| || |||||||||||||
Sbjct  1627  CCTGCAGGTGAA-AGCTGAAGACAAAGTTGCTAAGACGTCACAATCGATTACAATAACGA  1685

Query  526   ACGATAAAGGTCATTTGACAGGAGAAGAGATTGATGAAATGAT  568
             |||||||||||| |||||||| |||||||||||| ||||||||
Sbjct  1686  ACGATAAAGGTCGTTTGACAGAAGAAGAGATTGAGGAAATGAT  1728



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29386975995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5