BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921438
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23820.1 | Symbols: SPDS1 | spermidine synthase 1 | chr1:842... 1881 0.0
AT1G70310.1 | Symbols: SPDS2 | spermidine synthase 2 | chr1:264... 952 0.0
> AT1G23820.1 | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420265-8422985
FORWARD LENGTH=1411
Length=1411
Score = 1881 bits (1018), Expect = 0.0
Identities = 1122/1172 (96%), Gaps = 8/1172 (1%)
Strand=Plus/Plus
Query 11 AAAAAATGAAATGATATGTTCAG-TGTTACGCTCTTCTCTTCCTTATATCTTCAGCTTCA 69
||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct 4 AAAAAATGAAATGATATTTTCAGTTG-TACGCTCTTCTCTTCCTTATATCTTCCGCTTCA 62
Query 70 CTTCACATCAAAATCACCACCTCTCCTCAAAAACCCTA-AT--TCCTCTCTCTCATTTCT 126
||||||| ||||||||||| | || |||| |||||||| | |||||||||||||||||
Sbjct 63 CTTCACACCAAAATCACCA-C-CT-CTCACAAACCCTAGTTCCTCCTCTCTCTCATTTCT 119
Query 127 CGGAGATATTCACCAGAGCATTAACCATGGATGCTAAAGAATCCTCCGCCACCGATTTGA 186
|||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||||||
Sbjct 120 CGGAGATATTCACCAGAGCAATAACCATGGACGCTAAAGAAACCTCTGCCACCGATTTGA 179
Query 187 AAAGACCGAGAGAAGAGGATGATAACGGCGCCGCCGCAACCATGGAGACGGAGAACGGAG 246
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 180 AAAGACCGAGAGAAGAGGATGATAACGGCGGCGCCGCTACCATGGAGACGGAGAACGGAG 239
Query 247 ATCAGAAAAAGGAGCCTGCTTGTTTCTCCACTGTCATTCCTGGCTGGTTCTCTGAAATGA 306
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 240 ATCAGAAAAAGGAACCTGCTTGTTTCTCCACTGTTATTCCTGGGTGGTTCTCTGAAATGA 299
Query 307 GTCCTATGTGGCCAGGAGAAGCACACTCATTGAAGGTTGAGAAAGTTTTGTTTCAAGGGA 366
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTCCTATGTGGCCAGGAGAGGCACACTCATTGAAGGTTGAGAAAGTTTTGTTTCAAGGGA 359
Query 367 AATCAGATTATCAAGATGTGATTGTTTTCCAGTCTGCAACATATGGAAAAGTTTTGGTTT 426
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATCAGATTATCAGGATGTTATTGTTTTCCAGTCTGCAACATATGGAAAAGTTTTGGTTT 419
Query 427 TGGATGGAGTAATCCAACTTACCGAGAGAGATGAATGTGCCTATCAAGAAATGATCACTC 486
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 420 TGGATGGAGTAATCCAACTTACGGAGAGAGATGAATGTGCTTATCAGGAAATGATCACTC 479
Query 487 ATCTTCCTTTGTGCTCTATTCCTAACCCTAAGAAGGTCTTGGTTATTGGAGGAGGAGATG 546
||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 480 ATCTTCCTTTGTGTTCTATCCCTAACCCTAAGAAGGTTTTGGTCATTGGAGGAGGAGATG 539
Query 547 GAGGTGTCCTGCGGGAAGTTGCACGCCATGCTTCTGTTGAGCAGATTGACATGTGTGAAA 606
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 GAGGTGTCCTGCGGGAAGTTGCACGCCATGCTTCTATTGAGCAGATTGACATGTGTGAAA 599
Query 607 TTGATAAAATGGTGGTCGACGTGTCTAAGCAATTTTTCCCTGATGTAGCAATTGGATACG 666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 TTGATAAAATGGTGGTCGACGTGTCTAAGCAATTTTTCCCTGATGTAGCAATTGGATATG 659
Query 667 AGGATCCTCGCGTGAACCTTGTCATTGGCGATGGTGTTGCTTTCTTGAAGAATGCTGCTG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGATCCTCGCGTGAACCTTGTCATTGGCGATGGTGTTGCTTTCTTGAAGAATGCTGCTG 719
Query 727 AAGGATCATACGATGCGGTTATTGTTGACTCTTCAGATCCAATCGGTCCTGCAAAGGAGC 786
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGGATCATACGATGCAGTTATTGTTGACTCTTCAGATCCAATCGGTCCTGCAAAGGAGC 779
Query 787 TATTTGAGAAACCCTTCTTCCAATCCGTGGCTAGAGCTCTTCGTCCTGGTGGGGTTGTGT 846
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 780 TGTTTGAGAAACCCTTCTTCCAATCTGTGGCTAGAGCTCTTCGTCCTGGTGGAGTTGTGT 839
Query 847 GTACTCAGGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGACATTGTTGCAAACT 906
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 840 GCACTCAAGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGACATTGTTTCCAACT 899
Query 907 GCCGTGAGATCTTCAAGGGTTCTGTGAACTATGCCTGGACCAGCGTTCCAACATACCCCA 966
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 900 GCCGTGAGATCTTCAAGGGTTCTGTGAACTATGCTTGGACCAGCGTTCCAACATACCCCA 959
Query 967 GTGGGGTTATTGGATTTATGCTTTGTTCTACTGAGGGACCTGATGTTGACTTCAAACACC 1026
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 960 GTGGGGTCATTGGATTTATGCTTTGTTCAACTGAAGGACCTGATGTTGACTTCAAACACC 1019
Query 1027 CACTGAACCCAATTGACGAGAGCTCAAGCAAATCAAATGGACCTTTGAAGTTTTACAATG 1086
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 CACTGAACCCAATTGACGAGAGCTCCAGCAAATCAAATGGACCTTTGAAGTTTTACAATG 1079
Query 1087 CCGAGATTCATTCAGCCGCATTCTGCTTGCCTTCTTTCGCCAAGAAGGTAATTGAGTCAA 1146
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 CCGAGATTCATTCAGCTGCATTCTGCTTGCCTTCTTTCGCCAAGAAGGTCATTGAGTCAA 1139
Query 1147 AAGCCAATTGAAAAGAGAAAGAAAACTAATCT 1178
||||||||||||||| ||||||||||||||||
Sbjct 1140 AAGCCAATTGAAAAGGGAAAGAAAACTAATCT 1171
> AT1G70310.1 | Symbols: SPDS2 | spermidine synthase 2 | chr1:26485306-26487435
REVERSE LENGTH=1297
Length=1297
Score = 952 bits (515), Expect = 0.0
Identities = 819/964 (85%), Gaps = 27/964 (3%)
Strand=Plus/Plus
Query 226 CCATGGAGACGGAGAACGG-AGATCAGA-A-AAAGGAGCCTGCTTGTTTCTCCACTGTCA 282
||||||| || |||||||| || ||| | |||||||||| ||||| | ||| || | |
Sbjct 166 CCATGGAAACAGAGAACGGTGGAGGAGAGATAAAGGAGCCTTCTTGTATGTCCTCTATTA 225
Query 283 TTCCTGGCTGGTTCTCTGAAATGAGTCCTATGTGGCCAGGAGAAGCACACTCAT-TGAAG 341
||||||| ||||||||||| || |||||||||||||||||||||||||| || | | |||
Sbjct 226 TTCCTGGATGGTTCTCTGAGATTAGTCCTATGTGGCCAGGAGAAGCACATTC-TCTCAAG 284
Query 342 GTTGAGAAAG-TTTTGTTTCAAGGGAAATCAGATTATCAAGATGTGATTGTTTTCCAGTC 400
|| ||| ||| || | || ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 285 GTAGAG-AAGATTCTATTCCAAGGGAAATCAGATTACCAGGATGTTATTGTTTTCCAGTC 343
Query 401 TGCAACATATGGAAAAGTTTTGGTTTTGGATGGAGTAATCCAACTTACCGAGAGAGATGA 460
||||||||||||||| |||||||||||||||||||| || ||||| || |||||||||||
Sbjct 344 TGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCAACTCACTGAGAGAGATGA 403
Query 461 ATGTGCCTATCAAGAAATGATCACTCATCTTCCTTTGTGCTCTAT-TCCTAACCCTAAGA 519
|||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 404 ATGTGCGTATCAAGAAATGATCACTCATCTTCCTTTGTGCTCTATCTCC-AACCCCAAAA 462
Query 520 AGGT-CTTGGTTATTGGAGGAGGAGATGGAGGTGTCCTGCGGGAAGTTGCACGCCAT-GC 577
|||| || ||| |||||||||||||||||||| |||||| ||||||| ||||| ||| |
Sbjct 463 AGGTACT-GGTGATTGGAGGAGGAGATGGAGGAGTCCTGAGGGAAGTGGCACGTCATAG- 520
Query 578 TTCTGTTGAGCAGATTGACATGTGTGAAATTGATAAAATGGTGGTCGACGTGTCTAAGCA 637
||||||||||||||||||||| |||||||| |||||||||||||| || ||| |||||||
Sbjct 521 TTCTGTTGAGCAGATTGACATTTGTGAAATAGATAAAATGGTGGTTGATGTGGCTAAGCA 580
Query 638 ATTTTTCCCTGATGTAGCAATTGGATACGAGGATCCTCGCGTGAACCTTGTCATTGGCGA 697
| ||||||| |||||||| ||||||||||||||||||| || ||||| ||||||||||
Sbjct 581 GTATTTCCCTAATGTAGCAGTTGGATACGAGGATCCTCGTGTCAACCTCATCATTGGCGA 640
Query 698 TGGTGTTGCTTTCTTGAAGAATGCTGCTGAAGGATCATACGATGCGGTTATTGTTGACTC 757
||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||| ||
Sbjct 641 TGGTGTTGCTTTCTTGAAGAACGCTGCTGAAGGAACCTATGATGCAGTTATTGTTGATTC 700
Query 758 TTCAGATCCAATCGGTCCTGCAAAGGAGCTATTTGAGAAACCCTTCTTCCAATCCGTGGC 817
|| |||||||||||||| ||||| ||||||||||||||||| ||||| | || |||
Sbjct 701 ATCTGATCCAATCGGTCCAGCAAAAGAGCTATTTGAGAAACCTTTCTTTGAGTCAGTGAA 760
Query 818 TAGAGCTCTTCGTCCTGGTGGGGTTGTGTGTACTCAGGCTGAAAGCTTGTGGCTTCACAT 877
||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct 761 TAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAAGCTTGTGGCTTCACAT 820
Query 878 GGACATCATCGAAGACATTGTTGCAAACTGCCGTGAGATCTTCAAGGGTTCTGTGAACTA 937
||| ||||| |||||||||||| | || |||||||| ||||| || || ||||| |||||
Sbjct 821 GGATATCATTGAAGACATTGTTTCTAATTGCCGTGACATCTTTAAAGGATCTGTTAACTA 880
Query 938 TGCCTGGACCAGCGTTCCAACATACCCCAGTGGGGTTATTGGATTTATGCTTTGTTC-TA 996
|| |||||||| |||||||| ||||| ||||| || |||||||| ||||||||||| |
Sbjct 881 CGCTTGGACCAGTGTTCCAACTTACCCGAGTGGAGTCATTGGATTCATGCTTTGTTCAT- 939
Query 997 CTGAGGGACCTGATGTTGACTTCAA-ACACCCACTGAACCCAATTGA--C-GA-GA--GC 1049
|||| ||||| | || || ||||| | | ||| ||| | ||| || | || || ||
Sbjct 940 CTGAAGGACCACAAGTCGATTTCAAGA-AGCCAGTGAGTCTAATCGATACTGATGAAAGC 998
Query 1050 TCAAGCAAATCAAA-TGGACCTTTGAAGTTTTACAATGCCGAGATTCATTCAGCCGCATT 1108
|| | ||||||| | || |||| ||||| |||||| || |||||||| ||||| || ||
Sbjct 999 TCTATCAAATCACACTGTCCCTT-GAAGTATTACAACGCTGAGATTCACTCAGCTGCTTT 1057
Query 1109 CTGCTTGCCTTCTTTCGCCAAGAAGGTAATTGAGTCAAAAGCCAATT-GAAAAGAGAA-A 1166
||||||||| ||||| || |||||||| ||||| || |||||||| | |||||||||| |
Sbjct 1058 CTGCTTGCCCTCTTTTGCTAAGAAGGTGATTGATTCGAAAGCCAACTAGAAAAGAGAAGA 1117
Query 1167 GAAA 1170
||||
Sbjct 1118 GAAA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5