BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921440
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23840.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 547 5e-155
AT1G23830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 134 2e-30
> AT1G23840.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G23850.1); Has 53 Blast hits
to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:8424297-8425376 REVERSE
LENGTH=1080
Length=1080
Score = 547 bits (296), Expect = 5e-155
Identities = 352/378 (93%), Gaps = 8/378 (2%)
Strand=Plus/Plus
Query 349 ACATTAGTATGGTTGTTTCGGTCTTAGAGGAGGAAGAAGATGGTAAAGGCATCTATGGAA 408
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 701 ACATTAGTATGGTTGTTTCGGTCTTAGAAGAGGAAGAAGATAGTAAAGGCATCTATGGAA 760
Query 409 GCAGTGCTTTGTCTCTTTCCGCTTGGTACTTAAGAGGACAAGAGAAGCGTGACCTCTGGA 468
| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 761 GTAGTGCTCTGTCTCTTTCAGCTTGGTACTTAAGAGGACAAGAGAAGCGTGACTTCTGGA 820
Query 469 TGATGCTGA-TGTTCTTGGTCGGCGCTCTTGTGACGAGGATGCCGTGTTTATACTACAAA 527
||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 821 TGATGCT-AGTGTTCTTGGTCGGCGCTCTTGTGACAAGGATGCCATGTTTATACTACAAA 879
Query 528 TGCAGTGAAAGTCTGAGTGGGAATGGAGTGTTGTACACTGGTCTCTATGTAGGTTTGATT 587
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 880 TGCAGTGAAAGTCTGAGTGGGAATGGAGTGTTGTACACTGGTCTCTATGTAAGTTTGATT 939
Query 588 TGTGTTGGGAATGTGGTTAAATGGGTATCTTGTGTTGTTTGTTACCATGATTGTAACACA 647
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 940 TGTGTTGGGAATGTCGTTAAATGGGTTTCTTGTGTTGTTTGGTACCATGATTGTAACACA 999
Query 648 AAGGTTTTGAGGAAGAAGGGTGATGTAGAGATTGGATCAAAAGCCAAGGCTTTTGCTACA 707
| ||| |||||||| |||||||| || |||||||| |||||||| ||||||||||
Sbjct 1000 AGGGTCTTGAGGAAAAAGGGTGACGTGGAGATTGGGTCAAAAGC------TTTTGCTACA 1053
Query 708 TAGAGAAATTGTTTGTGA 725
||||||||||||||||||
Sbjct 1054 TAGAGAAATTGTTTGTGA 1071
Score = 481 bits (260), Expect = 5e-135
Identities = 320/349 (92%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 5 AGAAAGAGATAAACAAATGGAGACGAAGAGCGACGTGAAGCTAAGTATCATCGAACTACT 64
|||||||||| ||||||||||||| |||||||| | |||||||||| |||||||||||||
Sbjct 24 AGAAAGAGATCAACAAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGTCATCGAACTACT 83
Query 65 AAAACGAGCTGC-GAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCGTC-TTCTTC 122
|||||||||| | |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 84 AAAACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCCTCTTTCTT- 141
Query 123 TGCTCCCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCTCTCCAAACTACTGTC 182
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 142 TGCTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTC 201
Query 183 TCACTCGCTTCCACATACCTCTCCAAACTAGTCAATTCTGAGGAAGACTTATCGGAGAAT 242
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 202 TCACTCGCTTCCACATACATCTCCAAACTAGTCAATTCTGAGGAGGACTTGTCGGAGAAT 261
Query 243 GATCTTATTCCATGGTTGGTGCAGACATCTCTACTCTACTTCTTTCCCTACACTATTATC 302
|||||| |||| ||| || | |||||| |||| ||||||||||||||||| |||||| |
Sbjct 262 GATCTTCTTCCTTGGCTGATTCAGACAACTCTGCTCTACTTCTTTCCCTATACTATTCTT 321
Query 303 GACCTCCTTACCACCACCACGATCGTTGCAGCATCTTCGATTTCTTACA 351
||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 322 GACCTCCTTACCACCACCACGATCGTTGCAGCATCATCGATTGCTTACA 370
> AT1G23830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant
structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G23840.1);
Has 57 Blast hits to 52 proteins in 7 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8422960-8424088
REVERSE LENGTH=1129
Length=1129
Score = 134 bits (72), Expect = 2e-30
Identities = 101/115 (88%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 238 AGAATGATCTTATTCCATGGTTGGTGCAGACATCTCTACTCTACTTCTTTCCCTACACTA 297
|||||||||| ||| ||||| || | ||||||| ||| ||||||||||| |||||||| |
Sbjct 296 AGAATGATCTGATTTCATGGCTGATCCAGACATTTCTGCTCTACTTCTTCCCCTACACCA 355
Query 298 TTATCGACCTCCTTACCACCACCACGATCGTTGCAGCATCTTCGATT-TCTTACA 351
|| | ||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 356 TTCTTGACCTTCTTACCACCACCACGATCGTTGCAGCATCTTCGATTGT-TTACA 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35465307782
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5